miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33401 3' -50.7 NC_007605.1 + 155735 1.12 0.006023
Target:  5'- uUCCAUUAUGGGCUACGGCAACCAUGCc -3'
miRNA:   3'- -AGGUAAUACCCGAUGCCGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 49385 0.83 0.366403
Target:  5'- cUCCAgccuccccuggaggGUGGGCUugGGCAGCCG-GCg -3'
miRNA:   3'- -AGGUaa------------UACCCGAugCCGUUGGUaCG- -5'
33401 3' -50.7 NC_007605.1 + 102467 0.8 0.493943
Target:  5'- cUCUuggGUUAUGGGCUucuuaACGGCGggcACCAUGCc -3'
miRNA:   3'- -AGG---UAAUACCCGA-----UGCCGU---UGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 72587 0.75 0.733214
Target:  5'- gUCCAccUUGUaGGuaUGCGGCAGCCGgaUGCa -3'
miRNA:   3'- -AGGU--AAUA-CCcgAUGCCGUUGGU--ACG- -5'
33401 3' -50.7 NC_007605.1 + 125317 0.73 0.861625
Target:  5'- -----gGUGGGCUGCGGUugcaGGCCAggGCg -3'
miRNA:   3'- agguaaUACCCGAUGCCG----UUGGUa-CG- -5'
33401 3' -50.7 NC_007605.1 + 2733 0.72 0.891322
Target:  5'- aCCA----GGGCgGCGGCugaauGCCAUGCc -3'
miRNA:   3'- aGGUaauaCCCGaUGCCGu----UGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 96001 0.72 0.891322
Target:  5'- uUCCAccGUGGGUcccuuuGCAGCCAUGCa -3'
miRNA:   3'- -AGGUaaUACCCGaugc--CGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 135393 0.71 0.922947
Target:  5'- gCCcggGUGGGCUuccCGGCAgagGCCcUGCg -3'
miRNA:   3'- aGGuaaUACCCGAu--GCCGU---UGGuACG- -5'
33401 3' -50.7 NC_007605.1 + 120463 0.7 0.948204
Target:  5'- cUCCucugcUAUGGGCguaGGCAgcACCAUGg -3'
miRNA:   3'- -AGGua---AUACCCGaugCCGU--UGGUACg -5'
33401 3' -50.7 NC_007605.1 + 71109 0.7 0.952497
Target:  5'- aUCCAgaacgcgGGGCUcuGCacccuGGUGGCCAUGCu -3'
miRNA:   3'- -AGGUaaua---CCCGA--UG-----CCGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 166122 0.7 0.952497
Target:  5'- cCCAUauugGGGCaAUGGCGACCGUc- -3'
miRNA:   3'- aGGUAaua-CCCGaUGCCGUUGGUAcg -5'
33401 3' -50.7 NC_007605.1 + 63630 0.7 0.956545
Target:  5'- cUUCGUcgggGGGCUGgGccuGCAGCCGUGCc -3'
miRNA:   3'- -AGGUAaua-CCCGAUgC---CGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 82445 0.69 0.963921
Target:  5'- -----aAUGGGCUGCGGguGCCccAUGg -3'
miRNA:   3'- agguaaUACCCGAUGCCguUGG--UACg -5'
33401 3' -50.7 NC_007605.1 + 133189 0.69 0.963921
Target:  5'- cUCCGc-GUGGaGCUggACGGCA-UCAUGCg -3'
miRNA:   3'- -AGGUaaUACC-CGA--UGCCGUuGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 77252 0.69 0.970374
Target:  5'- aCgGUggcuUGGGCUGUGGUAACCGguggGCu -3'
miRNA:   3'- aGgUAau--ACCCGAUGCCGUUGGUa---CG- -5'
33401 3' -50.7 NC_007605.1 + 77497 0.69 0.970374
Target:  5'- gCCAcUggGGGcCUGgGGCGACguUGCa -3'
miRNA:   3'- aGGUaAuaCCC-GAUgCCGUUGguACG- -5'
33401 3' -50.7 NC_007605.1 + 161472 0.69 0.972423
Target:  5'- cCCGggGcUGGGCUGCgcaagcaggccgggGGCucuuCCAUGCg -3'
miRNA:   3'- aGGUaaU-ACCCGAUG--------------CCGuu--GGUACG- -5'
33401 3' -50.7 NC_007605.1 + 129758 0.69 0.97299
Target:  5'- aUCCuac--GGGCUGgagcgcuUGGCcGCCAUGCu -3'
miRNA:   3'- -AGGuaauaCCCGAU-------GCCGuUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 34116 0.69 0.97327
Target:  5'- cCCAgacccGGGCU-CGGCAGCCcaGCc -3'
miRNA:   3'- aGGUaaua-CCCGAuGCCGUUGGuaCG- -5'
33401 3' -50.7 NC_007605.1 + 134822 0.68 0.975955
Target:  5'- gCCAUgcucaGGGCcACGGCGuGCCAgagGCc -3'
miRNA:   3'- aGGUAaua--CCCGaUGCCGU-UGGUa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.