miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33401 3' -50.7 NC_007605.1 + 50585 0.67 0.986505
Target:  5'- gCCAcgg-GGGCgcUGGCGGCCG-GCg -3'
miRNA:   3'- aGGUaauaCCCGauGCCGUUGGUaCG- -5'
33401 3' -50.7 NC_007605.1 + 2931 0.68 0.982826
Target:  5'- uUCCAgccAUGGaGCggacugACGGCcccuCCGUGCc -3'
miRNA:   3'- -AGGUaa-UACC-CGa-----UGCCGuu--GGUACG- -5'
33401 3' -50.7 NC_007605.1 + 137260 0.68 0.980725
Target:  5'- gCCAcacaGUGGGCUuCGGgGGCCuguGUGCc -3'
miRNA:   3'- aGGUaa--UACCCGAuGCCgUUGG---UACG- -5'
33401 3' -50.7 NC_007605.1 + 49407 0.68 0.978437
Target:  5'- gCCA--GUGuGGCUGgGGCugguGCuCAUGCa -3'
miRNA:   3'- aGGUaaUAC-CCGAUgCCGu---UG-GUACG- -5'
33401 3' -50.7 NC_007605.1 + 58531 0.68 0.975955
Target:  5'- gUCCAgugAUGGGgagGCGGCGgggacGCCcgGUGCu -3'
miRNA:   3'- -AGGUaa-UACCCga-UGCCGU-----UGG--UACG- -5'
33401 3' -50.7 NC_007605.1 + 134822 0.68 0.975955
Target:  5'- gCCAUgcucaGGGCcACGGCGuGCCAgagGCc -3'
miRNA:   3'- aGGUAaua--CCCGaUGCCGU-UGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 34116 0.69 0.97327
Target:  5'- cCCAgacccGGGCU-CGGCAGCCcaGCc -3'
miRNA:   3'- aGGUaaua-CCCGAuGCCGUUGGuaCG- -5'
33401 3' -50.7 NC_007605.1 + 129758 0.69 0.97299
Target:  5'- aUCCuac--GGGCUGgagcgcuUGGCcGCCAUGCu -3'
miRNA:   3'- -AGGuaauaCCCGAU-------GCCGuUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 161472 0.69 0.972423
Target:  5'- cCCGggGcUGGGCUGCgcaagcaggccgggGGCucuuCCAUGCg -3'
miRNA:   3'- aGGUaaU-ACCCGAUG--------------CCGuu--GGUACG- -5'
33401 3' -50.7 NC_007605.1 + 77252 0.69 0.970374
Target:  5'- aCgGUggcuUGGGCUGUGGUAACCGguggGCu -3'
miRNA:   3'- aGgUAau--ACCCGAUGCCGUUGGUa---CG- -5'
33401 3' -50.7 NC_007605.1 + 77497 0.69 0.970374
Target:  5'- gCCAcUggGGGcCUGgGGCGACguUGCa -3'
miRNA:   3'- aGGUaAuaCCC-GAUgCCGUUGguACG- -5'
33401 3' -50.7 NC_007605.1 + 133189 0.69 0.963921
Target:  5'- cUCCGc-GUGGaGCUggACGGCA-UCAUGCg -3'
miRNA:   3'- -AGGUaaUACC-CGA--UGCCGUuGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 82445 0.69 0.963921
Target:  5'- -----aAUGGGCUGCGGguGCCccAUGg -3'
miRNA:   3'- agguaaUACCCGAUGCCguUGG--UACg -5'
33401 3' -50.7 NC_007605.1 + 63630 0.7 0.956545
Target:  5'- cUUCGUcgggGGGCUGgGccuGCAGCCGUGCc -3'
miRNA:   3'- -AGGUAaua-CCCGAUgC---CGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 166122 0.7 0.952497
Target:  5'- cCCAUauugGGGCaAUGGCGACCGUc- -3'
miRNA:   3'- aGGUAaua-CCCGaUGCCGUUGGUAcg -5'
33401 3' -50.7 NC_007605.1 + 71109 0.7 0.952497
Target:  5'- aUCCAgaacgcgGGGCUcuGCacccuGGUGGCCAUGCu -3'
miRNA:   3'- -AGGUaaua---CCCGA--UG-----CCGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 120463 0.7 0.948204
Target:  5'- cUCCucugcUAUGGGCguaGGCAgcACCAUGg -3'
miRNA:   3'- -AGGua---AUACCCGaugCCGU--UGGUACg -5'
33401 3' -50.7 NC_007605.1 + 135393 0.71 0.922947
Target:  5'- gCCcggGUGGGCUuccCGGCAgagGCCcUGCg -3'
miRNA:   3'- aGGuaaUACCCGAu--GCCGU---UGGuACG- -5'
33401 3' -50.7 NC_007605.1 + 96001 0.72 0.891322
Target:  5'- uUCCAccGUGGGUcccuuuGCAGCCAUGCa -3'
miRNA:   3'- -AGGUaaUACCCGaugc--CGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 2733 0.72 0.891322
Target:  5'- aCCA----GGGCgGCGGCugaauGCCAUGCc -3'
miRNA:   3'- aGGUaauaCCCGaUGCCGu----UGGUACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.