miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33401 3' -50.7 NC_007605.1 + 2733 0.72 0.891322
Target:  5'- aCCA----GGGCgGCGGCugaauGCCAUGCc -3'
miRNA:   3'- aGGUaauaCCCGaUGCCGu----UGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 2931 0.68 0.982826
Target:  5'- uUCCAgccAUGGaGCggacugACGGCcccuCCGUGCc -3'
miRNA:   3'- -AGGUaa-UACC-CGa-----UGCCGuu--GGUACG- -5'
33401 3' -50.7 NC_007605.1 + 34116 0.69 0.97327
Target:  5'- cCCAgacccGGGCU-CGGCAGCCcaGCc -3'
miRNA:   3'- aGGUaaua-CCCGAuGCCGUUGGuaCG- -5'
33401 3' -50.7 NC_007605.1 + 37648 0.66 0.996227
Target:  5'- gCUAUUAUGGGaCUcCGGU--UCAUGUa -3'
miRNA:   3'- aGGUAAUACCC-GAuGCCGuuGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 49385 0.83 0.366403
Target:  5'- cUCCAgccuccccuggaggGUGGGCUugGGCAGCCG-GCg -3'
miRNA:   3'- -AGGUaa------------UACCCGAugCCGUUGGUaCG- -5'
33401 3' -50.7 NC_007605.1 + 49407 0.68 0.978437
Target:  5'- gCCA--GUGuGGCUGgGGCugguGCuCAUGCa -3'
miRNA:   3'- aGGUaaUAC-CCGAUgCCGu---UG-GUACG- -5'
33401 3' -50.7 NC_007605.1 + 49811 0.66 0.994012
Target:  5'- cCCggUAUcgacGGCUGCGGCGGCgGagGCg -3'
miRNA:   3'- aGGuaAUAc---CCGAUGCCGUUGgUa-CG- -5'
33401 3' -50.7 NC_007605.1 + 50362 0.66 0.994012
Target:  5'- gCCGcgGUGGGCUGCccccgaggacgGGCGccggccGCCA-GCg -3'
miRNA:   3'- aGGUaaUACCCGAUG-----------CCGU------UGGUaCG- -5'
33401 3' -50.7 NC_007605.1 + 50585 0.67 0.986505
Target:  5'- gCCAcgg-GGGCgcUGGCGGCCG-GCg -3'
miRNA:   3'- aGGUaauaCCCGauGCCGUUGGUaCG- -5'
33401 3' -50.7 NC_007605.1 + 58531 0.68 0.975955
Target:  5'- gUCCAgugAUGGGgagGCGGCGgggacGCCcgGUGCu -3'
miRNA:   3'- -AGGUaa-UACCCga-UGCCGU-----UGG--UACG- -5'
33401 3' -50.7 NC_007605.1 + 63630 0.7 0.956545
Target:  5'- cUUCGUcgggGGGCUGgGccuGCAGCCGUGCc -3'
miRNA:   3'- -AGGUAaua-CCCGAUgC---CGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 67150 0.66 0.994844
Target:  5'- cUCCGgca-GGGUgACGGCGGCCGc-- -3'
miRNA:   3'- -AGGUaauaCCCGaUGCCGUUGGUacg -5'
33401 3' -50.7 NC_007605.1 + 69676 0.66 0.995579
Target:  5'- gUCUAUUAcuuuagcgGGGUaGCGGCccugagcgcAGCUAUGCg -3'
miRNA:   3'- -AGGUAAUa-------CCCGaUGCCG---------UUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 71109 0.7 0.952497
Target:  5'- aUCCAgaacgcgGGGCUcuGCacccuGGUGGCCAUGCu -3'
miRNA:   3'- -AGGUaaua---CCCGA--UG-----CCGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 72587 0.75 0.733214
Target:  5'- gUCCAccUUGUaGGuaUGCGGCAGCCGgaUGCa -3'
miRNA:   3'- -AGGU--AAUA-CCcgAUGCCGUUGGU--ACG- -5'
33401 3' -50.7 NC_007605.1 + 77252 0.69 0.970374
Target:  5'- aCgGUggcuUGGGCUGUGGUAACCGguggGCu -3'
miRNA:   3'- aGgUAau--ACCCGAUGCCGUUGGUa---CG- -5'
33401 3' -50.7 NC_007605.1 + 77497 0.69 0.970374
Target:  5'- gCCAcUggGGGcCUGgGGCGACguUGCa -3'
miRNA:   3'- aGGUaAuaCCC-GAUgCCGUUGguACG- -5'
33401 3' -50.7 NC_007605.1 + 82445 0.69 0.963921
Target:  5'- -----aAUGGGCUGCGGguGCCccAUGg -3'
miRNA:   3'- agguaaUACCCGAUGCCguUGG--UACg -5'
33401 3' -50.7 NC_007605.1 + 84601 0.66 0.993075
Target:  5'- gUCAUggagcagaGGGUUAUGGCAACCcuacUGCc -3'
miRNA:   3'- aGGUAaua-----CCCGAUGCCGUUGGu---ACG- -5'
33401 3' -50.7 NC_007605.1 + 85117 0.66 0.995579
Target:  5'- gCCA--GUGGGC-ACccGCcACCAUGCa -3'
miRNA:   3'- aGGUaaUACCCGaUGc-CGuUGGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.