miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33401 3' -50.7 NC_007605.1 + 171604 0.66 0.995579
Target:  5'- cCCcUUggGGGCUugGcuggcGCGGCCGgggGCg -3'
miRNA:   3'- aGGuAAuaCCCGAugC-----CGUUGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 171243 0.67 0.990851
Target:  5'- gUCGgg--GGGCgccGCGcgggcGCAGCCAUGCg -3'
miRNA:   3'- aGGUaauaCCCGa--UGC-----CGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 171066 0.66 0.995579
Target:  5'- cCCcUUggGGGCUugGcuggcGCGGCCGgggGCg -3'
miRNA:   3'- aGGuAAuaCCCGAugC-----CGUUGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 170705 0.67 0.990851
Target:  5'- gUCGgg--GGGCgccGCGcgggcGCAGCCAUGCg -3'
miRNA:   3'- aGGUaauaCCCGa--UGC-----CGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 170544 0.66 0.995579
Target:  5'- cCCcUUggGGGCUugGcuggcGCGGCCGgggGCg -3'
miRNA:   3'- aGGuAAuaCCCGAugC-----CGUUGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 170183 0.67 0.990851
Target:  5'- gUCGgg--GGGCgccGCGcgggcGCAGCCAUGCg -3'
miRNA:   3'- aGGUaauaCCCGa--UGC-----CGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 170006 0.66 0.995579
Target:  5'- cCCcUUggGGGCUugGcuggcGCGGCCGgggGCg -3'
miRNA:   3'- aGGuAAuaCCCGAugC-----CGUUGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 169091 0.67 0.990851
Target:  5'- cCCGgg--GGGCaagcugugggaaUGCGGUGGCCAagUGCa -3'
miRNA:   3'- aGGUaauaCCCG------------AUGCCGUUGGU--ACG- -5'
33401 3' -50.7 NC_007605.1 + 166122 0.7 0.952497
Target:  5'- cCCAUauugGGGCaAUGGCGACCGUc- -3'
miRNA:   3'- aGGUAaua-CCCGaUGCCGUUGGUAcg -5'
33401 3' -50.7 NC_007605.1 + 161472 0.69 0.972423
Target:  5'- cCCGggGcUGGGCUGCgcaagcaggccgggGGCucuuCCAUGCg -3'
miRNA:   3'- aGGUaaU-ACCCGAUG--------------CCGuu--GGUACG- -5'
33401 3' -50.7 NC_007605.1 + 156077 0.67 0.992024
Target:  5'- cCCAaga-GGGC-ACGGCAagGCCGgagGCa -3'
miRNA:   3'- aGGUaauaCCCGaUGCCGU--UGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 155735 1.12 0.006023
Target:  5'- uUCCAUUAUGGGCUACGGCAACCAUGCc -3'
miRNA:   3'- -AGGUAAUACCCGAUGCCGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 154856 0.66 0.993075
Target:  5'- cCCGag--GGGCgcaGGCGGCUcgGCa -3'
miRNA:   3'- aGGUaauaCCCGaugCCGUUGGuaCG- -5'
33401 3' -50.7 NC_007605.1 + 137260 0.68 0.980725
Target:  5'- gCCAcacaGUGGGCUuCGGgGGCCuguGUGCc -3'
miRNA:   3'- aGGUaa--UACCCGAuGCCgUUGG---UACG- -5'
33401 3' -50.7 NC_007605.1 + 135393 0.71 0.922947
Target:  5'- gCCcggGUGGGCUuccCGGCAgagGCCcUGCg -3'
miRNA:   3'- aGGuaaUACCCGAu--GCCGU---UGGuACG- -5'
33401 3' -50.7 NC_007605.1 + 134822 0.68 0.975955
Target:  5'- gCCAUgcucaGGGCcACGGCGuGCCAgagGCc -3'
miRNA:   3'- aGGUAaua--CCCGaUGCCGU-UGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 133189 0.69 0.963921
Target:  5'- cUCCGc-GUGGaGCUggACGGCA-UCAUGCg -3'
miRNA:   3'- -AGGUaaUACC-CGA--UGCCGUuGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 129758 0.69 0.97299
Target:  5'- aUCCuac--GGGCUGgagcgcuUGGCcGCCAUGCu -3'
miRNA:   3'- -AGGuaauaCCCGAU-------GCCGuUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 125317 0.73 0.861625
Target:  5'- -----gGUGGGCUGCGGUugcaGGCCAggGCg -3'
miRNA:   3'- agguaaUACCCGAUGCCG----UUGGUa-CG- -5'
33401 3' -50.7 NC_007605.1 + 120463 0.7 0.948204
Target:  5'- cUCCucugcUAUGGGCguaGGCAgcACCAUGg -3'
miRNA:   3'- -AGGua---AUACCCGaugCCGU--UGGUACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.