Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33401 | 3' | -50.7 | NC_007605.1 | + | 119519 | 0.66 | 0.995579 |
Target: 5'- aUCCAggaggGGGCcAUGGCuGCCAUu- -3' miRNA: 3'- -AGGUaaua-CCCGaUGCCGuUGGUAcg -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 109861 | 0.66 | 0.993075 |
Target: 5'- aUCCAUUuacuggGGGCUACaggaGGCcACCGacgaGCa -3' miRNA: 3'- -AGGUAAua----CCCGAUG----CCGuUGGUa---CG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 102663 | 0.67 | 0.990851 |
Target: 5'- gCCAUcGUGGGCcacggGgGGCGAgaCAUGUa -3' miRNA: 3'- aGGUAaUACCCGa----UgCCGUUg-GUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 102467 | 0.8 | 0.493943 |
Target: 5'- cUCUuggGUUAUGGGCUucuuaACGGCGggcACCAUGCc -3' miRNA: 3'- -AGG---UAAUACCCGA-----UGCCGU---UGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 96001 | 0.72 | 0.891322 |
Target: 5'- uUCCAccGUGGGUcccuuuGCAGCCAUGCa -3' miRNA: 3'- -AGGUaaUACCCGaugc--CGUUGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 85117 | 0.66 | 0.995579 |
Target: 5'- gCCA--GUGGGC-ACccGCcACCAUGCa -3' miRNA: 3'- aGGUaaUACCCGaUGc-CGuUGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 84601 | 0.66 | 0.993075 |
Target: 5'- gUCAUggagcagaGGGUUAUGGCAACCcuacUGCc -3' miRNA: 3'- aGGUAaua-----CCCGAUGCCGUUGGu---ACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 82445 | 0.69 | 0.963921 |
Target: 5'- -----aAUGGGCUGCGGguGCCccAUGg -3' miRNA: 3'- agguaaUACCCGAUGCCguUGG--UACg -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 77497 | 0.69 | 0.970374 |
Target: 5'- gCCAcUggGGGcCUGgGGCGACguUGCa -3' miRNA: 3'- aGGUaAuaCCC-GAUgCCGUUGguACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 77252 | 0.69 | 0.970374 |
Target: 5'- aCgGUggcuUGGGCUGUGGUAACCGguggGCu -3' miRNA: 3'- aGgUAau--ACCCGAUGCCGUUGGUa---CG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 72587 | 0.75 | 0.733214 |
Target: 5'- gUCCAccUUGUaGGuaUGCGGCAGCCGgaUGCa -3' miRNA: 3'- -AGGU--AAUA-CCcgAUGCCGUUGGU--ACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 71109 | 0.7 | 0.952497 |
Target: 5'- aUCCAgaacgcgGGGCUcuGCacccuGGUGGCCAUGCu -3' miRNA: 3'- -AGGUaaua---CCCGA--UG-----CCGUUGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 69676 | 0.66 | 0.995579 |
Target: 5'- gUCUAUUAcuuuagcgGGGUaGCGGCccugagcgcAGCUAUGCg -3' miRNA: 3'- -AGGUAAUa-------CCCGaUGCCG---------UUGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 67150 | 0.66 | 0.994844 |
Target: 5'- cUCCGgca-GGGUgACGGCGGCCGc-- -3' miRNA: 3'- -AGGUaauaCCCGaUGCCGUUGGUacg -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 63630 | 0.7 | 0.956545 |
Target: 5'- cUUCGUcgggGGGCUGgGccuGCAGCCGUGCc -3' miRNA: 3'- -AGGUAaua-CCCGAUgC---CGUUGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 58531 | 0.68 | 0.975955 |
Target: 5'- gUCCAgugAUGGGgagGCGGCGgggacGCCcgGUGCu -3' miRNA: 3'- -AGGUaa-UACCCga-UGCCGU-----UGG--UACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 50585 | 0.67 | 0.986505 |
Target: 5'- gCCAcgg-GGGCgcUGGCGGCCG-GCg -3' miRNA: 3'- aGGUaauaCCCGauGCCGUUGGUaCG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 50362 | 0.66 | 0.994012 |
Target: 5'- gCCGcgGUGGGCUGCccccgaggacgGGCGccggccGCCA-GCg -3' miRNA: 3'- aGGUaaUACCCGAUG-----------CCGU------UGGUaCG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 49811 | 0.66 | 0.994012 |
Target: 5'- cCCggUAUcgacGGCUGCGGCGGCgGagGCg -3' miRNA: 3'- aGGuaAUAc---CCGAUGCCGUUGgUa-CG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 49407 | 0.68 | 0.978437 |
Target: 5'- gCCA--GUGuGGCUGgGGCugguGCuCAUGCa -3' miRNA: 3'- aGGUaaUAC-CCGAUgCCGu---UG-GUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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