Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33401 | 3' | -50.7 | NC_007605.1 | + | 119519 | 0.66 | 0.995579 |
Target: 5'- aUCCAggaggGGGCcAUGGCuGCCAUu- -3' miRNA: 3'- -AGGUaaua-CCCGaUGCCGuUGGUAcg -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 169091 | 0.67 | 0.990851 |
Target: 5'- cCCGgg--GGGCaagcugugggaaUGCGGUGGCCAagUGCa -3' miRNA: 3'- aGGUaauaCCCG------------AUGCCGUUGGU--ACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 170183 | 0.67 | 0.990851 |
Target: 5'- gUCGgg--GGGCgccGCGcgggcGCAGCCAUGCg -3' miRNA: 3'- aGGUaauaCCCGa--UGC-----CGUUGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 170705 | 0.67 | 0.990851 |
Target: 5'- gUCGgg--GGGCgccGCGcgggcGCAGCCAUGCg -3' miRNA: 3'- aGGUaauaCCCGa--UGC-----CGUUGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 171243 | 0.67 | 0.990851 |
Target: 5'- gUCGgg--GGGCgccGCGcgggcGCAGCCAUGCg -3' miRNA: 3'- aGGUaauaCCCGa--UGC-----CGUUGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 84601 | 0.66 | 0.993075 |
Target: 5'- gUCAUggagcagaGGGUUAUGGCAACCcuacUGCc -3' miRNA: 3'- aGGUAaua-----CCCGAUGCCGUUGGu---ACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 50362 | 0.66 | 0.994012 |
Target: 5'- gCCGcgGUGGGCUGCccccgaggacgGGCGccggccGCCA-GCg -3' miRNA: 3'- aGGUaaUACCCGAUG-----------CCGU------UGGUaCG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 69676 | 0.66 | 0.995579 |
Target: 5'- gUCUAUUAcuuuagcgGGGUaGCGGCccugagcgcAGCUAUGCg -3' miRNA: 3'- -AGGUAAUa-------CCCGaUGCCG---------UUGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 85117 | 0.66 | 0.995579 |
Target: 5'- gCCA--GUGGGC-ACccGCcACCAUGCa -3' miRNA: 3'- aGGUaaUACCCGaUGc-CGuUGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 102663 | 0.67 | 0.990851 |
Target: 5'- gCCAUcGUGGGCcacggGgGGCGAgaCAUGUa -3' miRNA: 3'- aGGUAaUACCCGa----UgCCGUUg-GUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 2931 | 0.68 | 0.982826 |
Target: 5'- uUCCAgccAUGGaGCggacugACGGCcccuCCGUGCc -3' miRNA: 3'- -AGGUaa-UACC-CGa-----UGCCGuu--GGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 49407 | 0.68 | 0.978437 |
Target: 5'- gCCA--GUGuGGCUGgGGCugguGCuCAUGCa -3' miRNA: 3'- aGGUaaUAC-CCGAUgCCGu---UG-GUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 2733 | 0.72 | 0.891322 |
Target: 5'- aCCA----GGGCgGCGGCugaauGCCAUGCc -3' miRNA: 3'- aGGUaauaCCCGaUGCCGu----UGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 120463 | 0.7 | 0.948204 |
Target: 5'- cUCCucugcUAUGGGCguaGGCAgcACCAUGg -3' miRNA: 3'- -AGGua---AUACCCGaugCCGU--UGGUACg -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 166122 | 0.7 | 0.952497 |
Target: 5'- cCCAUauugGGGCaAUGGCGACCGUc- -3' miRNA: 3'- aGGUAaua-CCCGaUGCCGUUGGUAcg -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 63630 | 0.7 | 0.956545 |
Target: 5'- cUUCGUcgggGGGCUGgGccuGCAGCCGUGCc -3' miRNA: 3'- -AGGUAaua-CCCGAUgC---CGUUGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 133189 | 0.69 | 0.963921 |
Target: 5'- cUCCGc-GUGGaGCUggACGGCA-UCAUGCg -3' miRNA: 3'- -AGGUaaUACC-CGA--UGCCGUuGGUACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 77497 | 0.69 | 0.970374 |
Target: 5'- gCCAcUggGGGcCUGgGGCGACguUGCa -3' miRNA: 3'- aGGUaAuaCCC-GAUgCCGUUGguACG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 77252 | 0.69 | 0.970374 |
Target: 5'- aCgGUggcuUGGGCUGUGGUAACCGguggGCu -3' miRNA: 3'- aGgUAau--ACCCGAUGCCGUUGGUa---CG- -5' |
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33401 | 3' | -50.7 | NC_007605.1 | + | 134822 | 0.68 | 0.975955 |
Target: 5'- gCCAUgcucaGGGCcACGGCGuGCCAgagGCc -3' miRNA: 3'- aGGUAaua--CCCGaUGCCGU-UGGUa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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