miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33401 3' -50.7 NC_007605.1 + 134822 0.68 0.975955
Target:  5'- gCCAUgcucaGGGCcACGGCGuGCCAgagGCc -3'
miRNA:   3'- aGGUAaua--CCCGaUGCCGU-UGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 58531 0.68 0.975955
Target:  5'- gUCCAgugAUGGGgagGCGGCGgggacGCCcgGUGCu -3'
miRNA:   3'- -AGGUaa-UACCCga-UGCCGU-----UGG--UACG- -5'
33401 3' -50.7 NC_007605.1 + 137260 0.68 0.980725
Target:  5'- gCCAcacaGUGGGCUuCGGgGGCCuguGUGCc -3'
miRNA:   3'- aGGUaa--UACCCGAuGCCgUUGG---UACG- -5'
33401 3' -50.7 NC_007605.1 + 50585 0.67 0.986505
Target:  5'- gCCAcgg-GGGCgcUGGCGGCCG-GCg -3'
miRNA:   3'- aGGUaauaCCCGauGCCGUUGGUaCG- -5'
33401 3' -50.7 NC_007605.1 + 156077 0.67 0.992024
Target:  5'- cCCAaga-GGGC-ACGGCAagGCCGgagGCa -3'
miRNA:   3'- aGGUaauaCCCGaUGCCGU--UGGUa--CG- -5'
33401 3' -50.7 NC_007605.1 + 109861 0.66 0.993075
Target:  5'- aUCCAUUuacuggGGGCUACaggaGGCcACCGacgaGCa -3'
miRNA:   3'- -AGGUAAua----CCCGAUG----CCGuUGGUa---CG- -5'
33401 3' -50.7 NC_007605.1 + 154856 0.66 0.993075
Target:  5'- cCCGag--GGGCgcaGGCGGCUcgGCa -3'
miRNA:   3'- aGGUaauaCCCGaugCCGUUGGuaCG- -5'
33401 3' -50.7 NC_007605.1 + 49811 0.66 0.994012
Target:  5'- cCCggUAUcgacGGCUGCGGCGGCgGagGCg -3'
miRNA:   3'- aGGuaAUAc---CCGAUGCCGUUGgUa-CG- -5'
33401 3' -50.7 NC_007605.1 + 67150 0.66 0.994844
Target:  5'- cUCCGgca-GGGUgACGGCGGCCGc-- -3'
miRNA:   3'- -AGGUaauaCCCGaUGCCGUUGGUacg -5'
33401 3' -50.7 NC_007605.1 + 34116 0.69 0.97327
Target:  5'- cCCAgacccGGGCU-CGGCAGCCcaGCc -3'
miRNA:   3'- aGGUaaua-CCCGAuGCCGUUGGuaCG- -5'
33401 3' -50.7 NC_007605.1 + 129758 0.69 0.97299
Target:  5'- aUCCuac--GGGCUGgagcgcuUGGCcGCCAUGCu -3'
miRNA:   3'- -AGGuaauaCCCGAU-------GCCGuUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 161472 0.69 0.972423
Target:  5'- cCCGggGcUGGGCUGCgcaagcaggccgggGGCucuuCCAUGCg -3'
miRNA:   3'- aGGUaaU-ACCCGAUG--------------CCGuu--GGUACG- -5'
33401 3' -50.7 NC_007605.1 + 37648 0.66 0.996227
Target:  5'- gCUAUUAUGGGaCUcCGGU--UCAUGUa -3'
miRNA:   3'- aGGUAAUACCC-GAuGCCGuuGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 49385 0.83 0.366403
Target:  5'- cUCCAgccuccccuggaggGUGGGCUugGGCAGCCG-GCg -3'
miRNA:   3'- -AGGUaa------------UACCCGAugCCGUUGGUaCG- -5'
33401 3' -50.7 NC_007605.1 + 102467 0.8 0.493943
Target:  5'- cUCUuggGUUAUGGGCUucuuaACGGCGggcACCAUGCc -3'
miRNA:   3'- -AGG---UAAUACCCGA-----UGCCGU---UGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 125317 0.73 0.861625
Target:  5'- -----gGUGGGCUGCGGUugcaGGCCAggGCg -3'
miRNA:   3'- agguaaUACCCGAUGCCG----UUGGUa-CG- -5'
33401 3' -50.7 NC_007605.1 + 96001 0.72 0.891322
Target:  5'- uUCCAccGUGGGUcccuuuGCAGCCAUGCa -3'
miRNA:   3'- -AGGUaaUACCCGaugc--CGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 135393 0.71 0.922947
Target:  5'- gCCcggGUGGGCUuccCGGCAgagGCCcUGCg -3'
miRNA:   3'- aGGuaaUACCCGAu--GCCGU---UGGuACG- -5'
33401 3' -50.7 NC_007605.1 + 71109 0.7 0.952497
Target:  5'- aUCCAgaacgcgGGGCUcuGCacccuGGUGGCCAUGCu -3'
miRNA:   3'- -AGGUaaua---CCCGA--UG-----CCGUUGGUACG- -5'
33401 3' -50.7 NC_007605.1 + 82445 0.69 0.963921
Target:  5'- -----aAUGGGCUGCGGguGCCccAUGg -3'
miRNA:   3'- agguaaUACCCGAUGCCguUGG--UACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.