miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33402 3' -58.6 NC_007605.1 + 162746 0.67 0.767144
Target:  5'- gAGCGUGUUCAGGcacacggccGGGGCcCGGCc-- -3'
miRNA:   3'- gUCGCACGGGUUC---------UCCCGuGCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 99635 0.67 0.767144
Target:  5'- uCAGCGUGCCCGccuccAGAaucauaaauaGGGCugaGGCcAGu -3'
miRNA:   3'- -GUCGCACGGGU-----UCU----------CCCGug-CCGuUC- -5'
33402 3' -58.6 NC_007605.1 + 112726 0.67 0.767144
Target:  5'- uGGaCGagGUCCuggacGAGGGGGCGCGGCuGGa -3'
miRNA:   3'- gUC-GCa-CGGG-----UUCUCCCGUGCCGuUC- -5'
33402 3' -58.6 NC_007605.1 + 83819 0.67 0.757785
Target:  5'- gCGGCaGgagGCCCGcggcaGGAGGcccCGCGGCAGGa -3'
miRNA:   3'- -GUCG-Ca--CGGGU-----UCUCCc--GUGCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 169320 0.67 0.748318
Target:  5'- aGGCG-G-CUAAGAGGGCuaaggguCGGCGGGu -3'
miRNA:   3'- gUCGCaCgGGUUCUCCCGu------GCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 103806 0.67 0.748318
Target:  5'- aCAGCuccuUGCCCAGGAcacaGGuGCGCccguaGGCAAGg -3'
miRNA:   3'- -GUCGc---ACGGGUUCU----CC-CGUG-----CCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 52308 0.67 0.748318
Target:  5'- -uGUGgaccagGCCCAAGAacucgGGGUGCGGCcAGa -3'
miRNA:   3'- guCGCa-----CGGGUUCU-----CCCGUGCCGuUC- -5'
33402 3' -58.6 NC_007605.1 + 169311 0.67 0.748318
Target:  5'- aGGCGggugagGCggCUAAGAGGGCuaaggguCGGCGGGu -3'
miRNA:   3'- gUCGCa-----CG--GGUUCUCCCGu------GCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 164031 0.67 0.748318
Target:  5'- cCAGUGUGgccaccucCCUAAGAGGGUAggUGGcCAGGg -3'
miRNA:   3'- -GUCGCAC--------GGGUUCUCCCGU--GCC-GUUC- -5'
33402 3' -58.6 NC_007605.1 + 20538 0.67 0.738753
Target:  5'- -uGCGgccGCCCAGGGGGGCAaauuGCGu- -3'
miRNA:   3'- guCGCa--CGGGUUCUCCCGUgc--CGUuc -5'
33402 3' -58.6 NC_007605.1 + 168569 0.67 0.738753
Target:  5'- aCAGCacugggGCCCGGG-GGGCGCGcGUAGc -3'
miRNA:   3'- -GUCGca----CGGGUUCuCCCGUGC-CGUUc -5'
33402 3' -58.6 NC_007605.1 + 162980 0.67 0.738753
Target:  5'- uGGCccaccccaGCCCGAGAagcaGGGUcgGCGGCAGGg -3'
miRNA:   3'- gUCGca------CGGGUUCU----CCCG--UGCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 127944 0.67 0.729097
Target:  5'- aCAG-GUGCCCAAGcuGGGCAaugcccccgcCGcGCAGGu -3'
miRNA:   3'- -GUCgCACGGGUUCu-CCCGU----------GC-CGUUC- -5'
33402 3' -58.6 NC_007605.1 + 113274 0.68 0.713482
Target:  5'- uGGUGggGCCCGAGcuuguguccagugauGGGGagGCGGCGGGg -3'
miRNA:   3'- gUCGCa-CGGGUUC---------------UCCCg-UGCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 144123 0.68 0.70955
Target:  5'- -uGCGUGgCCAAGAgGGGCAgGuacuggguGCAGGg -3'
miRNA:   3'- guCGCACgGGUUCU-CCCGUgC--------CGUUC- -5'
33402 3' -58.6 NC_007605.1 + 137985 0.68 0.70955
Target:  5'- -uGCGUGgCCAAGAgGGGCAgGuacuggguGCAGGg -3'
miRNA:   3'- guCGCACgGGUUCU-CCCGUgC--------CGUUC- -5'
33402 3' -58.6 NC_007605.1 + 147192 0.68 0.70955
Target:  5'- -uGCGUGgCCAAGAgGGGCAgGuacuggguGCAGGg -3'
miRNA:   3'- guCGCACgGGUUCU-CCCGUgC--------CGUUC- -5'
33402 3' -58.6 NC_007605.1 + 153330 0.68 0.70955
Target:  5'- -uGCGUGgCCAAGAgGGGCAgGuacuggguGCAGGg -3'
miRNA:   3'- guCGCACgGGUUCU-CCCGUgC--------CGUUC- -5'
33402 3' -58.6 NC_007605.1 + 150261 0.68 0.70955
Target:  5'- -uGCGUGgCCAAGAgGGGCAgGuacuggguGCAGGg -3'
miRNA:   3'- guCGCACgGGUUCU-CCCGUgC--------CGUUC- -5'
33402 3' -58.6 NC_007605.1 + 156399 0.68 0.70955
Target:  5'- -uGCGUGgCCAAGAgGGGCAgGuacuggguGCAGGg -3'
miRNA:   3'- guCGCACgGGUUCU-CCCGUgC--------CGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.