miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33402 5' -56.5 NC_007605.1 + 136179 0.67 0.889031
Target:  5'- uUACCCgaGCGGGAGgCCgg-GGACguggCCg -3'
miRNA:   3'- -GUGGG--UGCCUUCgGGagaCCUGaa--GG- -5'
33402 5' -56.5 NC_007605.1 + 39196 0.67 0.882234
Target:  5'- gACCC-CGGGugGGaUCCauggCUGGAUUUCCa -3'
miRNA:   3'- gUGGGuGCCU--UC-GGGa---GACCUGAAGG- -5'
33402 5' -56.5 NC_007605.1 + 71260 0.67 0.880849
Target:  5'- gGCCCACGGGcaugagcAGCCCgaguaugUCUacaGCUUCCu -3'
miRNA:   3'- gUGGGUGCCU-------UCGGG-------AGAcc-UGAAGG- -5'
33402 5' -56.5 NC_007605.1 + 136936 0.67 0.875222
Target:  5'- aCACCCACucGggGCCUUacGGAUUUCa -3'
miRNA:   3'- -GUGGGUGc-CuuCGGGAgaCCUGAAGg -5'
33402 5' -56.5 NC_007605.1 + 63560 0.67 0.874509
Target:  5'- uGCCC-CaGGAGGCCUuuguggaUCUGGACgcguggcucUCCg -3'
miRNA:   3'- gUGGGuG-CCUUCGGG-------AGACCUGa--------AGG- -5'
33402 5' -56.5 NC_007605.1 + 115228 0.67 0.867999
Target:  5'- cCAUCUACaGggGCCCgcacgUGGACgUCCc -3'
miRNA:   3'- -GUGGGUGcCuuCGGGag---ACCUGaAGG- -5'
33402 5' -56.5 NC_007605.1 + 145629 0.67 0.867999
Target:  5'- uCACCUAacgUGGAAGCCUggUGGGugaucCUUCCu -3'
miRNA:   3'- -GUGGGU---GCCUUCGGGagACCU-----GAAGG- -5'
33402 5' -56.5 NC_007605.1 + 52125 0.67 0.867999
Target:  5'- cCGCCCugGGGAGCuCUUCUccgcguguauaGGccuGCUUCa -3'
miRNA:   3'- -GUGGGugCCUUCG-GGAGA-----------CC---UGAAGg -5'
33402 5' -56.5 NC_007605.1 + 14277 0.67 0.86057
Target:  5'- gGCCCcCgGGAAGUCC-CUGGGCacCCu -3'
miRNA:   3'- gUGGGuG-CCUUCGGGaGACCUGaaGG- -5'
33402 5' -56.5 NC_007605.1 + 13141 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 16210 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 19279 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 22348 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 28486 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 31555 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 34624 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 25417 0.67 0.86057
Target:  5'- -cCUCGCGGAgaggGGCCuCUUUGGGCccucaagUCCa -3'
miRNA:   3'- guGGGUGCCU----UCGG-GAGACCUGa------AGG- -5'
33402 5' -56.5 NC_007605.1 + 158363 0.67 0.852941
Target:  5'- gACCCGgGGAGGCCagaagCUGGGg-UCUa -3'
miRNA:   3'- gUGGGUgCCUUCGGga---GACCUgaAGG- -5'
33402 5' -56.5 NC_007605.1 + 139949 0.67 0.852941
Target:  5'- gACCCGgGGAGGCCagaagCUGGGg-UCUa -3'
miRNA:   3'- gUGGGUgCCUUCGGga---GACCUgaAGG- -5'
33402 5' -56.5 NC_007605.1 + 155294 0.67 0.852941
Target:  5'- gACCCGgGGAGGCCagaagCUGGGg-UCUa -3'
miRNA:   3'- gUGGGUgCCUUCGGga---GACCUgaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.