miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33404 3' -60.4 NC_007605.1 + 50842 0.66 0.735276
Target:  5'- gGCUGCgacccCGUGCgCCCgUGGUGgCCg- -3'
miRNA:   3'- aCGAUGa----GCGCG-GGGgACCACaGGaa -5'
33404 3' -60.4 NC_007605.1 + 131745 0.66 0.710094
Target:  5'- aUGCUuggauaacuuacuaaACUCGCGCCCaugggcggCCaGGUGUUCg- -3'
miRNA:   3'- -ACGA---------------UGAGCGCGGG--------GGaCCACAGGaa -5'
33404 3' -60.4 NC_007605.1 + 125989 0.66 0.696347
Target:  5'- aGUUGCU-GCGUCCCUgcugccggaGGUGUCCg- -3'
miRNA:   3'- aCGAUGAgCGCGGGGGa--------CCACAGGaa -5'
33404 3' -60.4 NC_007605.1 + 103029 0.67 0.666578
Target:  5'- aGCUGCagGC-CUCCCUGG-GUCCc- -3'
miRNA:   3'- aCGAUGagCGcGGGGGACCaCAGGaa -5'
33404 3' -60.4 NC_007605.1 + 73104 0.67 0.636569
Target:  5'- cUGCgcCUCauGCGCCgCCUGG-GUCCa- -3'
miRNA:   3'- -ACGauGAG--CGCGGgGGACCaCAGGaa -5'
33404 3' -60.4 NC_007605.1 + 148725 0.69 0.537369
Target:  5'- cGaCUGCUCGCccccucccagGCCuCCCUGGUGagcCCUUg -3'
miRNA:   3'- aC-GAUGAGCG----------CGG-GGGACCACa--GGAA- -5'
33404 3' -60.4 NC_007605.1 + 61855 0.69 0.51807
Target:  5'- aUGCUGgcCUCuGUGCCCCg-GGUGUCCc- -3'
miRNA:   3'- -ACGAU--GAG-CGCGGGGgaCCACAGGaa -5'
33404 3' -60.4 NC_007605.1 + 3053 0.7 0.489661
Target:  5'- gGCUACgCGCGCCCCCcGGgccCCa- -3'
miRNA:   3'- aCGAUGaGCGCGGGGGaCCacaGGaa -5'
33404 3' -60.4 NC_007605.1 + 145400 0.7 0.480352
Target:  5'- gUGCUAgUUGUGCCCaCUGGUGUUUa- -3'
miRNA:   3'- -ACGAUgAGCGCGGGgGACCACAGGaa -5'
33404 3' -60.4 NC_007605.1 + 126364 0.72 0.38438
Target:  5'- gGCcggGC-CGgGCCCCCgggGGUGUCCa- -3'
miRNA:   3'- aCGa--UGaGCgCGGGGGa--CCACAGGaa -5'
33404 3' -60.4 NC_007605.1 + 157229 1.04 0.002204
Target:  5'- gUGCUACUCGCGCCCCCUGGUGUCCUUc -3'
miRNA:   3'- -ACGAUGAGCGCGGGGGACCACAGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.