miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33405 5' -56 NC_007605.1 + 53180 0.66 0.914045
Target:  5'- -gUGCCcGCCGGGuCGGGGCUCc---- -3'
miRNA:   3'- auGCGGuCGGUCU-GCCUCGAGauacu -5'
33405 5' -56 NC_007605.1 + 160786 0.66 0.914045
Target:  5'- aACGgUGGCCAGACGGcGCUUg---- -3'
miRNA:   3'- aUGCgGUCGGUCUGCCuCGAGauacu -5'
33405 5' -56 NC_007605.1 + 170872 0.66 0.907403
Target:  5'- cGCGCCAGCCaagcccccaagggGGGCggGGAGCgggCaAUGGa -3'
miRNA:   3'- aUGCGGUCGG-------------UCUG--CCUCGa--GaUACU- -5'
33405 5' -56 NC_007605.1 + 171410 0.66 0.907403
Target:  5'- cGCGCCAGCCaagcccccaagggGGGCggGGAGCgggCaAUGGa -3'
miRNA:   3'- aUGCGGUCGG-------------UCUG--CCUCGa--GaUACU- -5'
33405 5' -56 NC_007605.1 + 170350 0.66 0.907403
Target:  5'- cGCGCCAGCCaagcccccaagggGGGCggGGAGCgggCaAUGGa -3'
miRNA:   3'- aUGCGGUCGG-------------UCUG--CCUCGa--GaUACU- -5'
33405 5' -56 NC_007605.1 + 169812 0.66 0.907403
Target:  5'- cGCGCCAGCCaagcccccaagggGGGCggGGAGCgggCaAUGGa -3'
miRNA:   3'- aUGCGGUCGG-------------UCUG--CCUCGa--GaUACU- -5'
33405 5' -56 NC_007605.1 + 37086 0.66 0.901754
Target:  5'- gACGCCguccucgaaGGCUAGACGcAGCUgUGUGc -3'
miRNA:   3'- aUGCGG---------UCGGUCUGCcUCGAgAUACu -5'
33405 5' -56 NC_007605.1 + 11706 0.66 0.901754
Target:  5'- -gUGCCc-CCGGaggugGCGGAGCUCUcgGAg -3'
miRNA:   3'- auGCGGucGGUC-----UGCCUCGAGAuaCU- -5'
33405 5' -56 NC_007605.1 + 68078 0.66 0.901754
Target:  5'- cACGCCAGCaaggcuCAGGCGGcGUUaagGUGAc -3'
miRNA:   3'- aUGCGGUCG------GUCUGCCuCGAga-UACU- -5'
33405 5' -56 NC_007605.1 + 83708 0.66 0.888519
Target:  5'- gGCGCCauuauacgaGGCCGGGCGGAaggagGCgucaCUAUGu -3'
miRNA:   3'- aUGCGG---------UCGGUCUGCCU-----CGa---GAUACu -5'
33405 5' -56 NC_007605.1 + 59415 0.66 0.881556
Target:  5'- gUugGUCgAGCCGGAUGGAGCccUCUcagccUGAa -3'
miRNA:   3'- -AugCGG-UCGGUCUGCCUCG--AGAu----ACU- -5'
33405 5' -56 NC_007605.1 + 3995 0.67 0.857015
Target:  5'- cGCGCCGGgCAGACaacucggccgugauGGAGg-CUAUGAc -3'
miRNA:   3'- aUGCGGUCgGUCUG--------------CCUCgaGAUACU- -5'
33405 5' -56 NC_007605.1 + 108688 0.67 0.851513
Target:  5'- gACGCCgGGCCGGAgGGGGCa------ -3'
miRNA:   3'- aUGCGG-UCGGUCUgCCUCGagauacu -5'
33405 5' -56 NC_007605.1 + 159484 0.68 0.835259
Target:  5'- gGCGCCGGaCGGGCcGGGCUCUcGUGc -3'
miRNA:   3'- aUGCGGUCgGUCUGcCUCGAGA-UACu -5'
33405 5' -56 NC_007605.1 + 74293 0.68 0.800568
Target:  5'- aGCGUCAGaaCCAGGCcGcagcGGCUCUGUGAg -3'
miRNA:   3'- aUGCGGUC--GGUCUGcC----UCGAGAUACU- -5'
33405 5' -56 NC_007605.1 + 51261 0.69 0.782263
Target:  5'- -cUGCCAgggGCCaccuucucuaAGAgGGGGCUCUGUGGg -3'
miRNA:   3'- auGCGGU---CGG----------UCUgCCUCGAGAUACU- -5'
33405 5' -56 NC_007605.1 + 57885 0.69 0.782263
Target:  5'- gGCGgCGGCCGGAgGuGGGCUUcuUGUGGg -3'
miRNA:   3'- aUGCgGUCGGUCUgC-CUCGAG--AUACU- -5'
33405 5' -56 NC_007605.1 + 79564 0.69 0.772901
Target:  5'- cACGCCGGaCAGA-GGAGCUacGUGAg -3'
miRNA:   3'- aUGCGGUCgGUCUgCCUCGAgaUACU- -5'
33405 5' -56 NC_007605.1 + 54171 0.69 0.772901
Target:  5'- gAgGCCAGCCuGGGCGGGGCgguugcCUGgggGAu -3'
miRNA:   3'- aUgCGGUCGG-UCUGCCUCGa-----GAUa--CU- -5'
33405 5' -56 NC_007605.1 + 98308 0.69 0.763412
Target:  5'- cUugGCCGGCCAGGCcaccugccGGGGC-CaGUGGa -3'
miRNA:   3'- -AugCGGUCGGUCUG--------CCUCGaGaUACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.