miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33406 5' -53 NC_007605.1 + 170191 0.66 0.977933
Target:  5'- gCGCCGCGCG--GGCGcAGCCAuGCg--- -3'
miRNA:   3'- -GCGGUGCGCagUCGU-UUGGU-CGaaag -5'
33406 5' -53 NC_007605.1 + 139618 0.66 0.977933
Target:  5'- cCGCCAgG-GUCcGUuuACCAGgCUUUCa -3'
miRNA:   3'- -GCGGUgCgCAGuCGuuUGGUC-GAAAG- -5'
33406 5' -53 NC_007605.1 + 169297 0.66 0.977933
Target:  5'- gGCCuCGUGUCAGCGGucuCUGGCc--- -3'
miRNA:   3'- gCGGuGCGCAGUCGUUu--GGUCGaaag -5'
33406 5' -53 NC_007605.1 + 171251 0.66 0.977933
Target:  5'- gCGCCGCGCG--GGCGcAGCCAuGCg--- -3'
miRNA:   3'- -GCGGUGCGCagUCGU-UUGGU-CGaaag -5'
33406 5' -53 NC_007605.1 + 170713 0.66 0.977933
Target:  5'- gCGCCGCGCG--GGCGcAGCCAuGCg--- -3'
miRNA:   3'- -GCGGUGCGCagUCGU-UUGGU-CGaaag -5'
33406 5' -53 NC_007605.1 + 9352 0.66 0.977933
Target:  5'- aGCCACucaGUGUUGGCAAAUguGCa--- -3'
miRNA:   3'- gCGGUG---CGCAGUCGUUUGguCGaaag -5'
33406 5' -53 NC_007605.1 + 160082 0.66 0.975701
Target:  5'- cCGCCugGCGgacuucauucucaaaCAGUcccgAGACCGGCUccggaUUCa -3'
miRNA:   3'- -GCGGugCGCa--------------GUCG----UUUGGUCGA-----AAG- -5'
33406 5' -53 NC_007605.1 + 34338 0.66 0.975443
Target:  5'- aGCCACGCGuuuauUCAGCAAuuCCucGCa--- -3'
miRNA:   3'- gCGGUGCGC-----AGUCGUUu-GGu-CGaaag -5'
33406 5' -53 NC_007605.1 + 151009 0.66 0.972754
Target:  5'- aCGCCACGgGg-GGCGGGCCcGCa--- -3'
miRNA:   3'- -GCGGUGCgCagUCGUUUGGuCGaaag -5'
33406 5' -53 NC_007605.1 + 95350 0.66 0.972754
Target:  5'- cCGCCGcCGCGUUugugggacuggaAGCGccGGCCGGCa--- -3'
miRNA:   3'- -GCGGU-GCGCAG------------UCGU--UUGGUCGaaag -5'
33406 5' -53 NC_007605.1 + 152331 0.66 0.96675
Target:  5'- aGCCA-GUGUUAGCAGaAUCAGCa--- -3'
miRNA:   3'- gCGGUgCGCAGUCGUU-UGGUCGaaag -5'
33406 5' -53 NC_007605.1 + 134234 0.66 0.96675
Target:  5'- uGCCAUgGCGUCAGCugguauGCCgGGCg--- -3'
miRNA:   3'- gCGGUG-CGCAGUCGuu----UGG-UCGaaag -5'
33406 5' -53 NC_007605.1 + 42168 0.66 0.966427
Target:  5'- aGCCAC-CGUCGGCuaccccaAGGCCGGggUUUa -3'
miRNA:   3'- gCGGUGcGCAGUCG-------UUUGGUCgaAAG- -5'
33406 5' -53 NC_007605.1 + 50118 0.67 0.959866
Target:  5'- uGCCACG-GcCAGCAGGCCAcCUg-- -3'
miRNA:   3'- gCGGUGCgCaGUCGUUUGGUcGAaag -5'
33406 5' -53 NC_007605.1 + 50245 0.67 0.959866
Target:  5'- gGCCGCGCGcCAGgcucCGAGCCGGaaugCa -3'
miRNA:   3'- gCGGUGCGCaGUC----GUUUGGUCgaaaG- -5'
33406 5' -53 NC_007605.1 + 98264 0.67 0.959866
Target:  5'- gGCCugGCauUCAGCGucgcauaCGGCUUUCc -3'
miRNA:   3'- gCGGugCGc-AGUCGUuug----GUCGAAAG- -5'
33406 5' -53 NC_007605.1 + 103903 0.67 0.95206
Target:  5'- gGCCACaGCGUCAGgGgaGACCucgaAGCUg-- -3'
miRNA:   3'- gCGGUG-CGCAGUCgU--UUGG----UCGAaag -5'
33406 5' -53 NC_007605.1 + 69985 0.67 0.947798
Target:  5'- aGCaUugGCGUCGGgAAACaCAGCUc-- -3'
miRNA:   3'- gCG-GugCGCAGUCgUUUG-GUCGAaag -5'
33406 5' -53 NC_007605.1 + 151898 0.67 0.947798
Target:  5'- cCGCCA-GUaggUAGC-AGCCGGCUUUCa -3'
miRNA:   3'- -GCGGUgCGca-GUCGuUUGGUCGAAAG- -5'
33406 5' -53 NC_007605.1 + 49148 0.68 0.938543
Target:  5'- uGCCgucucuaucagACGCGUUauGGCAcGCCGGCUg-- -3'
miRNA:   3'- gCGG-----------UGCGCAG--UCGUuUGGUCGAaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.