miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33407 3' -49.5 NC_007605.1 + 8843 0.66 0.998978
Target:  5'- cGGCCGccaGUCCCaugugcucgcUCUGCGA--GGGCCg -3'
miRNA:   3'- aUUGGCa--CAGGG----------AGAUGUUguUCUGG- -5'
33407 3' -49.5 NC_007605.1 + 62042 0.66 0.998978
Target:  5'- -cGCCGgg-CCagggGCAGCGAGGCCa -3'
miRNA:   3'- auUGGCacaGGgagaUGUUGUUCUGG- -5'
33407 3' -49.5 NC_007605.1 + 9435 0.66 0.998978
Target:  5'- --cCCGUGUCacaUgUGgAACAGGGCCc -3'
miRNA:   3'- auuGGCACAGgg-AgAUgUUGUUCUGG- -5'
33407 3' -49.5 NC_007605.1 + 8885 0.66 0.998958
Target:  5'- cGGCCGUGUgCCUgaACAcgcucuucuuuagGCugaGGGACCg -3'
miRNA:   3'- aUUGGCACAgGGAgaUGU-------------UG---UUCUGG- -5'
33407 3' -49.5 NC_007605.1 + 101571 0.66 0.998757
Target:  5'- gAGCCGUGUCUC-CUgACGcCAAuGCCa -3'
miRNA:   3'- aUUGGCACAGGGaGA-UGUuGUUcUGG- -5'
33407 3' -49.5 NC_007605.1 + 16637 0.66 0.998495
Target:  5'- aGAUUGUGaCCggCUACAACGuGGCCa -3'
miRNA:   3'- aUUGGCACaGGgaGAUGUUGUuCUGG- -5'
33407 3' -49.5 NC_007605.1 + 132456 0.66 0.998495
Target:  5'- --uCUGUGUgCCCUCUcCAcACAcGACCu -3'
miRNA:   3'- auuGGCACA-GGGAGAuGU-UGUuCUGG- -5'
33407 3' -49.5 NC_007605.1 + 36763 0.66 0.998495
Target:  5'- gGACCGUGccaUCCUCUcggaugcgcACGACuacgAGGGCCu -3'
miRNA:   3'- aUUGGCACa--GGGAGA---------UGUUG----UUCUGG- -5'
33407 3' -49.5 NC_007605.1 + 155 0.66 0.998409
Target:  5'- gUGACCGccaccggcuUGgCCCUCUcacuucuacucuugGCAGCAGuGGCCa -3'
miRNA:   3'- -AUUGGC---------ACaGGGAGA--------------UGUUGUU-CUGG- -5'
33407 3' -49.5 NC_007605.1 + 46816 0.66 0.998189
Target:  5'- cUGGCCGUGUCCUgugugaacACGGaauucaAAGACCu -3'
miRNA:   3'- -AUUGGCACAGGGaga-----UGUUg-----UUCUGG- -5'
33407 3' -49.5 NC_007605.1 + 48507 0.66 0.998189
Target:  5'- -uGCCuuugGUGUCCCUgUGCAuCAAcACCu -3'
miRNA:   3'- auUGG----CACAGGGAgAUGUuGUUcUGG- -5'
33407 3' -49.5 NC_007605.1 + 149128 0.66 0.997832
Target:  5'- -uGCCGggGUCCCUCcgGCuGGCcugguGGACCc -3'
miRNA:   3'- auUGGCa-CAGGGAGa-UG-UUGu----UCUGG- -5'
33407 3' -49.5 NC_007605.1 + 158335 0.66 0.997832
Target:  5'- -uGCCGggGUCCCUCcgGCuGGCcugguGGACCc -3'
miRNA:   3'- auUGGCa-CAGGGAGa-UG-UUGu----UCUGG- -5'
33407 3' -49.5 NC_007605.1 + 155266 0.66 0.997832
Target:  5'- -uGCCGggGUCCCUCcgGCuGGCcugguGGACCc -3'
miRNA:   3'- auUGGCa-CAGGGAGa-UG-UUGu----UCUGG- -5'
33407 3' -49.5 NC_007605.1 + 146059 0.66 0.997832
Target:  5'- -uGCCGggGUCCCUCcgGCuGGCcugguGGACCc -3'
miRNA:   3'- auUGGCa-CAGGGAGa-UG-UUGu----UCUGG- -5'
33407 3' -49.5 NC_007605.1 + 139921 0.66 0.997832
Target:  5'- -uGCCGggGUCCCUCcgGCuGGCcugguGGACCc -3'
miRNA:   3'- auUGGCa-CAGGGAGa-UG-UUGu----UCUGG- -5'
33407 3' -49.5 NC_007605.1 + 142990 0.66 0.997832
Target:  5'- -uGCCGggGUCCCUCcgGCuGGCcugguGGACCc -3'
miRNA:   3'- auUGGCa-CAGGGAGa-UG-UUGu----UCUGG- -5'
33407 3' -49.5 NC_007605.1 + 152197 0.66 0.997832
Target:  5'- -uGCCGggGUCCCUCcgGCuGGCcugguGGACCc -3'
miRNA:   3'- auUGGCa-CAGGGAGa-UG-UUGu----UCUGG- -5'
33407 3' -49.5 NC_007605.1 + 136852 0.66 0.997832
Target:  5'- -uGCCGggGUCCCUCcgGCuGGCcugguGGACCc -3'
miRNA:   3'- auUGGCa-CAGGGAGa-UG-UUGu----UCUGG- -5'
33407 3' -49.5 NC_007605.1 + 9855 0.67 0.997418
Target:  5'- -cGCuCG-GUCCCUgUcccCAGCGGGGCCa -3'
miRNA:   3'- auUG-GCaCAGGGAgAu--GUUGUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.