miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33408 3' -64.3 NC_007605.1 + 58542 0.66 0.613819
Target:  5'- -cAUAGGUGCuGaCUcugacaugGGCGGGGGUGCCc -3'
miRNA:   3'- ccUGUCCGCG-C-GG--------CCGCUCCCACGGc -5'
33408 3' -64.3 NC_007605.1 + 143173 0.66 0.613819
Target:  5'- aGGCAGGgacccCGCGCCacccgcuucauGGgGGGGGagGCCGc -3'
miRNA:   3'- cCUGUCC-----GCGCGG-----------CCgCUCCCa-CGGC- -5'
33408 3' -64.3 NC_007605.1 + 40358 0.66 0.613819
Target:  5'- aGGCAGGgacccCGCGCCacccgcuucauGGgGGGGGagGCCGc -3'
miRNA:   3'- cCUGUCC-----GCGCGG-----------CCgCUCCCa-CGGC- -5'
33408 3' -64.3 NC_007605.1 + 40091 0.66 0.613819
Target:  5'- gGGugGGuGCGgucCGCUGGCcccacccuGGGGGUaGCCGc -3'
miRNA:   3'- -CCugUC-CGC---GCGGCCG--------CUCCCA-CGGC- -5'
33408 3' -64.3 NC_007605.1 + 63376 0.66 0.613819
Target:  5'- uGGACuGGgGUGCgGGUGcGGGUGaugguaCGg -3'
miRNA:   3'- -CCUGuCCgCGCGgCCGCuCCCACg-----GC- -5'
33408 3' -64.3 NC_007605.1 + 39673 0.66 0.604298
Target:  5'- cGGGC-GGC-CGCCGGUGGGuccgcuGG-GCCGc -3'
miRNA:   3'- -CCUGuCCGcGCGGCCGCUC------CCaCGGC- -5'
33408 3' -64.3 NC_007605.1 + 39548 0.66 0.604298
Target:  5'- cGGGC-GGC-CGCCGGUGGGuccgcuGG-GCCGc -3'
miRNA:   3'- -CCUGuCCGcGCGGCCGCUC------CCaCGGC- -5'
33408 3' -64.3 NC_007605.1 + 39298 0.66 0.604298
Target:  5'- cGGGC-GGC-CGCCGGUGGGuccgcuGG-GCCGc -3'
miRNA:   3'- -CCUGuCCGcGCGGCCGCUC------CCaCGGC- -5'
33408 3' -64.3 NC_007605.1 + 39173 0.66 0.604298
Target:  5'- cGGGC-GGC-CGCCGGUGGGuccgcuGG-GCCGc -3'
miRNA:   3'- -CCUGuCCGcGCGGCCGCUC------CCaCGGC- -5'
33408 3' -64.3 NC_007605.1 + 39048 0.66 0.604298
Target:  5'- cGGGC-GGC-CGCCGGUGGGuccgcuGG-GCCGc -3'
miRNA:   3'- -CCUGuCCGcGCGGCCGCUC------CCaCGGC- -5'
33408 3' -64.3 NC_007605.1 + 38799 0.66 0.604298
Target:  5'- cGGGC-GGC-CGCCGGUGGGuccgcuGG-GCCGc -3'
miRNA:   3'- -CCUGuCCGcGCGGCCGCUC------CCaCGGC- -5'
33408 3' -64.3 NC_007605.1 + 38674 0.66 0.604298
Target:  5'- cGGGC-GGC-CGCCGGUGGGuccgcuGG-GCCGc -3'
miRNA:   3'- -CCUGuCCGcGCGGCCGCUC------CCaCGGC- -5'
33408 3' -64.3 NC_007605.1 + 38549 0.66 0.604298
Target:  5'- cGGGC-GGC-CGCCGGUGGGuccgcuGG-GCCGc -3'
miRNA:   3'- -CCUGuCCGcGCGGCCGCUC------CCaCGGC- -5'
33408 3' -64.3 NC_007605.1 + 38299 0.66 0.604298
Target:  5'- cGGGC-GGC-CGCCGGUGGGuccgcuGG-GCCGc -3'
miRNA:   3'- -CCUGuCCGcGCGGCCGCUC------CCaCGGC- -5'
33408 3' -64.3 NC_007605.1 + 38424 0.66 0.604298
Target:  5'- cGGGC-GGC-CGCCGGUGGGuccgcuGG-GCCGc -3'
miRNA:   3'- -CCUGuCCGcGCGGCCGCUC------CCaCGGC- -5'
33408 3' -64.3 NC_007605.1 + 10624 0.66 0.604298
Target:  5'- uGGCAGGUGgGCgGGaaGGGGcacaagaaUGCCGg -3'
miRNA:   3'- cCUGUCCGCgCGgCCgcUCCC--------ACGGC- -5'
33408 3' -64.3 NC_007605.1 + 39423 0.66 0.604298
Target:  5'- cGGGC-GGC-CGCCGGUGGGuccgcuGG-GCCGc -3'
miRNA:   3'- -CCUGuCCGcGCGGCCGCUC------CCaCGGC- -5'
33408 3' -64.3 NC_007605.1 + 61964 0.66 0.594794
Target:  5'- aGGACGGGCacaGCCGcGaCGGGGG-GCg- -3'
miRNA:   3'- -CCUGUCCGcg-CGGC-C-GCUCCCaCGgc -5'
33408 3' -64.3 NC_007605.1 + 18720 0.66 0.593845
Target:  5'- aGGACGGGgG-GCUGGCGAagauucccaaccgGGGgaucGCUGa -3'
miRNA:   3'- -CCUGUCCgCgCGGCCGCU-------------CCCa---CGGC- -5'
33408 3' -64.3 NC_007605.1 + 141686 0.66 0.585315
Target:  5'- ---uGGGUccgcugccccGCuCCGGCgGGGGGUGCCGg -3'
miRNA:   3'- ccugUCCG----------CGcGGCCG-CUCCCACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.