miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33409 5' -56.3 NC_007605.1 + 112917 0.66 0.922472
Target:  5'- cGGCAGuuGUucAGuCCCUGGCCGAGGuCCu -3'
miRNA:   3'- -UUGUCu-CGc-UCuGGGACUGGCUCU-GG- -5'
33409 5' -56.3 NC_007605.1 + 125923 0.66 0.922472
Target:  5'- cGGCGGAGgGAGGCCCg---CGAGcuuCCa -3'
miRNA:   3'- -UUGUCUCgCUCUGGGacugGCUCu--GG- -5'
33409 5' -56.3 NC_007605.1 + 135185 0.66 0.922472
Target:  5'- -cCGGGGCGcaGGGCCuCUG-CCGGGAagcCCa -3'
miRNA:   3'- uuGUCUCGC--UCUGG-GACuGGCUCU---GG- -5'
33409 5' -56.3 NC_007605.1 + 48040 0.66 0.916886
Target:  5'- aGACAGGcGCGAGAccuacuCCCUGcaacACagGAGGCCc -3'
miRNA:   3'- -UUGUCU-CGCUCU------GGGAC----UGg-CUCUGG- -5'
33409 5' -56.3 NC_007605.1 + 18373 0.66 0.916886
Target:  5'- gAAgGGGGCGAGAaagaCggagaUGGCCGAGgACCc -3'
miRNA:   3'- -UUgUCUCGCUCUg---Gg----ACUGGCUC-UGG- -5'
33409 5' -56.3 NC_007605.1 + 105540 0.66 0.911066
Target:  5'- cACAaAG-GGGGCCCUGucCCGGGACa -3'
miRNA:   3'- uUGUcUCgCUCUGGGACu-GGCUCUGg -5'
33409 5' -56.3 NC_007605.1 + 150776 0.66 0.911066
Target:  5'- -cCAGAGCaGAG-CCCggGACUGAcucagGGCCa -3'
miRNA:   3'- uuGUCUCG-CUCuGGGa-CUGGCU-----CUGG- -5'
33409 5' -56.3 NC_007605.1 + 87803 0.66 0.911066
Target:  5'- cGCGGGgccuccugccGCGGGGCuCCUGcCgCGGGGCCu -3'
miRNA:   3'- uUGUCU----------CGCUCUG-GGACuG-GCUCUGG- -5'
33409 5' -56.3 NC_007605.1 + 71258 0.66 0.911066
Target:  5'- -cCGGccccuCGAGAUUCUGACCgGGGACCu -3'
miRNA:   3'- uuGUCuc---GCUCUGGGACUGG-CUCUGG- -5'
33409 5' -56.3 NC_007605.1 + 28931 0.66 0.911066
Target:  5'- gAGCGGGGCaGcGACCCagcgGACCcgguGGGCCa -3'
miRNA:   3'- -UUGUCUCG-CuCUGGGa---CUGGc---UCUGG- -5'
33409 5' -56.3 NC_007605.1 + 133958 0.66 0.905013
Target:  5'- uGugGGAGCGGGACUaCUGcccaCGAcGGCCg -3'
miRNA:   3'- -UugUCUCGCUCUGG-GACug--GCU-CUGG- -5'
33409 5' -56.3 NC_007605.1 + 156658 0.66 0.905013
Target:  5'- gGACGGAGgGGGccugaaGCCCgggGACUGGGaACUg -3'
miRNA:   3'- -UUGUCUCgCUC------UGGGa--CUGGCUC-UGG- -5'
33409 5' -56.3 NC_007605.1 + 136499 0.66 0.89873
Target:  5'- -cCGGAGCGGucGCCCcGGCCGGcGGCUa -3'
miRNA:   3'- uuGUCUCGCUc-UGGGaCUGGCU-CUGG- -5'
33409 5' -56.3 NC_007605.1 + 110135 0.66 0.89873
Target:  5'- gGGCGGAGgcCGAGGCCgUGGacagaCGAGcCCg -3'
miRNA:   3'- -UUGUCUC--GCUCUGGgACUg----GCUCuGG- -5'
33409 5' -56.3 NC_007605.1 + 131532 0.66 0.896801
Target:  5'- -cCAGGGUGGGGCCagcgGACCGcacccacccaggucGGACUa -3'
miRNA:   3'- uuGUCUCGCUCUGGga--CUGGC--------------UCUGG- -5'
33409 5' -56.3 NC_007605.1 + 4412 0.66 0.892219
Target:  5'- --uGGAGau-GGCCCUGGCCGGgcagcggggaguGACCa -3'
miRNA:   3'- uugUCUCgcuCUGGGACUGGCU------------CUGG- -5'
33409 5' -56.3 NC_007605.1 + 72847 0.66 0.892219
Target:  5'- cGACaAGAGCGccGGuCCCUgcaaGACCG-GACCc -3'
miRNA:   3'- -UUG-UCUCGC--UCuGGGA----CUGGCuCUGG- -5'
33409 5' -56.3 NC_007605.1 + 109744 0.66 0.892219
Target:  5'- cGACuauGuguaCGAGGCCCUGcuCUGGGACCa -3'
miRNA:   3'- -UUGu--Cuc--GCUCUGGGACu-GGCUCUGG- -5'
33409 5' -56.3 NC_007605.1 + 76293 0.66 0.891556
Target:  5'- cGCGGcGGCGGcuuCCCUGACUGAagcccagGACCa -3'
miRNA:   3'- uUGUC-UCGCUcu-GGGACUGGCU-------CUGG- -5'
33409 5' -56.3 NC_007605.1 + 59278 0.67 0.878529
Target:  5'- -cCAGGaCaacAGGCCCUGGCaCGAGGCCc -3'
miRNA:   3'- uuGUCUcGc--UCUGGGACUG-GCUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.