miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33410 3' -62.5 NC_007605.1 + 109219 0.66 0.673036
Target:  5'- -cCGGcGCAucauCGaagaGGGCAGcGGGGAGGu -3'
miRNA:   3'- uaGCCaCGUu---GC----CCCGUC-CCCCUCCc -5'
33410 3' -62.5 NC_007605.1 + 95859 0.66 0.673036
Target:  5'- --aGGaGCAGgaGGGGCAGGagcaggaGGAGGGg -3'
miRNA:   3'- uagCCaCGUUg-CCCCGUCCc------CCUCCC- -5'
33410 3' -62.5 NC_007605.1 + 131805 0.66 0.653629
Target:  5'- --aGGgauCGGCGGGGCuGGGGuccAGGGg -3'
miRNA:   3'- uagCCac-GUUGCCCCGuCCCCc--UCCC- -5'
33410 3' -62.5 NC_007605.1 + 96498 0.66 0.653629
Target:  5'- --aGGaGCAGgaggaGGGGCAGGagcaGGAGGGg -3'
miRNA:   3'- uagCCaCGUUg----CCCCGUCCc---CCUCCC- -5'
33410 3' -62.5 NC_007605.1 + 82922 0.66 0.643898
Target:  5'- --gGGcGUAugGGGGCucGGGGcuGGGGa -3'
miRNA:   3'- uagCCaCGUugCCCCGucCCCC--UCCC- -5'
33410 3' -62.5 NC_007605.1 + 52079 0.66 0.643898
Target:  5'- -aCGGUGCcguaggaaGACGGGGUuucgcGGGGGAc-- -3'
miRNA:   3'- uaGCCACG--------UUGCCCCGu----CCCCCUccc -5'
33410 3' -62.5 NC_007605.1 + 96357 0.66 0.63416
Target:  5'- --aGGgGCAGgaGGGGCAGGagcaggaGGAGGGg -3'
miRNA:   3'- uagCCaCGUUg-CCCCGUCCc------CCUCCC- -5'
33410 3' -62.5 NC_007605.1 + 96021 0.66 0.63416
Target:  5'- --aGGgGCAGgaGGGGCAGGagcaggaGGAGGGg -3'
miRNA:   3'- uagCCaCGUUg-CCCCGUCCc------CCUCCC- -5'
33410 3' -62.5 NC_007605.1 + 134940 0.66 0.63416
Target:  5'- gGUgGGUGCuguCGGGcGUAGaGGGGGGa -3'
miRNA:   3'- -UAgCCACGuu-GCCC-CGUCcCCCUCCc -5'
33410 3' -62.5 NC_007605.1 + 96138 0.66 0.63416
Target:  5'- --aGGgGCAGgaGGGGCAGGagcaggaGGAGGGg -3'
miRNA:   3'- uagCCaCGUUg-CCCCGUCCc------CCUCCC- -5'
33410 3' -62.5 NC_007605.1 + 96102 0.66 0.63416
Target:  5'- --aGGgGCAGgaGGGGCAGGagcaggaGGAGGGg -3'
miRNA:   3'- uagCCaCGUUg-CCCCGUCCc------CCUCCC- -5'
33410 3' -62.5 NC_007605.1 + 96057 0.66 0.63416
Target:  5'- --aGGgGCAGgaGGGGCAGGagcaggaGGAGGGg -3'
miRNA:   3'- uagCCaCGUUg-CCCCGUCCc------CCUCCC- -5'
33410 3' -62.5 NC_007605.1 + 35766 0.66 0.63416
Target:  5'- -gCGGUGguuUGGGGUAugucuGGGuGGAGGGa -3'
miRNA:   3'- uaGCCACguuGCCCCGU-----CCC-CCUCCC- -5'
33410 3' -62.5 NC_007605.1 + 95976 0.66 0.63416
Target:  5'- --aGGgGCAGgaGGGGCAGGagcaggaGGAGGGg -3'
miRNA:   3'- uagCCaCGUUg-CCCCGUCCc------CCUCCC- -5'
33410 3' -62.5 NC_007605.1 + 75611 0.66 0.624419
Target:  5'- uGUCGGccUGUggUGaGGGauagaAGGGGGGGGc -3'
miRNA:   3'- -UAGCC--ACGuuGC-CCCg----UCCCCCUCCc -5'
33410 3' -62.5 NC_007605.1 + 150920 0.67 0.614684
Target:  5'- --gGGUGgGACGGGGCAGGcGuGAuccuGGGc -3'
miRNA:   3'- uagCCACgUUGCCCCGUCCcC-CU----CCC- -5'
33410 3' -62.5 NC_007605.1 + 171147 0.67 0.604961
Target:  5'- -gCGGcGCuACGGcgggcgggcGGCGGGGGGucGGGg -3'
miRNA:   3'- uaGCCaCGuUGCC---------CCGUCCCCCu-CCC- -5'
33410 3' -62.5 NC_007605.1 + 169550 0.67 0.604961
Target:  5'- -gCGGcGCuACGGcgggcgggcGGCGGGGGGucGGGg -3'
miRNA:   3'- uaGCCaCGuUGCC---------CCGUCCCCCu-CCC- -5'
33410 3' -62.5 NC_007605.1 + 170610 0.67 0.604961
Target:  5'- -gCGGcGCuACGGcgggcgggcGGCGGGGGGucGGGg -3'
miRNA:   3'- uaGCCaCGuUGCC---------CCGUCCCCCu-CCC- -5'
33410 3' -62.5 NC_007605.1 + 170087 0.67 0.604961
Target:  5'- -gCGGcGCuACGGcgggcgggcGGCGGGGGGucGGGg -3'
miRNA:   3'- uaGCCaCGuUGCC---------CCGUCCCCCu-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.