miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33410 5' -58.5 NC_007605.1 + 17830 0.66 0.820099
Target:  5'- -cCCUGCgCUUUgccgaUGCCCUGgccGCCCa -3'
miRNA:   3'- aaGGGCG-GAGAg----ACGGGACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 92599 0.66 0.802786
Target:  5'- -gCCCGCCccauUCUC-GCCC-GUggGCCUu -3'
miRNA:   3'- aaGGGCGG----AGAGaCGGGaCAaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 16945 0.66 0.793898
Target:  5'- aUUCCuCGCCUCUUUGCagcg---GCCCc -3'
miRNA:   3'- -AAGG-GCGGAGAGACGggacaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 19973 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 13836 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 66262 0.66 0.784867
Target:  5'- -gCCCGCugccacCUCUCUGCCaggGgc-GCCCc -3'
miRNA:   3'- aaGGGCG------GAGAGACGGga-CaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 16905 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 111878 0.66 0.784867
Target:  5'- gUUCUCGCCgcCUUUGCUCgcacgGCCCg -3'
miRNA:   3'- -AAGGGCGGa-GAGACGGGacaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 29180 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 23042 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 95109 0.66 0.784867
Target:  5'- -cCCCGCCgUCUC--CCCaGUaUGCCCc -3'
miRNA:   3'- aaGGGCGG-AGAGacGGGaCAaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 32249 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 26111 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 48910 0.67 0.779384
Target:  5'- cUCCCGCCUCUUggaugccaucaucCCCUGcUUGggaCCCg -3'
miRNA:   3'- aAGGGCGGAGAGac-----------GGGACaAAC---GGG- -5'
33410 5' -58.5 NC_007605.1 + 101016 0.67 0.775702
Target:  5'- gUCCaCGUaggUCgcgGCCCUGgggUUGCCCa -3'
miRNA:   3'- aAGG-GCGgagAGa--CGGGACa--AACGGG- -5'
33410 5' -58.5 NC_007605.1 + 115905 0.67 0.775702
Target:  5'- cUCCCGCCUCUCc-CUCUGcgacaCCCg -3'
miRNA:   3'- aAGGGCGGAGAGacGGGACaaac-GGG- -5'
33410 5' -58.5 NC_007605.1 + 146988 0.67 0.773854
Target:  5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3'
miRNA:   3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5'
33410 5' -58.5 NC_007605.1 + 150057 0.67 0.773854
Target:  5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3'
miRNA:   3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5'
33410 5' -58.5 NC_007605.1 + 140850 0.67 0.773854
Target:  5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3'
miRNA:   3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5'
33410 5' -58.5 NC_007605.1 + 153126 0.67 0.773854
Target:  5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3'
miRNA:   3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.