Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33410 | 5' | -58.5 | NC_007605.1 | + | 24509 | 0.67 | 0.770142 |
Target: 5'- --gCCGCCUgUCUGCuugccaaccaaagucCCUGgcUGCUCa -3' miRNA: 3'- aagGGCGGAgAGACG---------------GGACaaACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 75325 | 0.67 | 0.757004 |
Target: 5'- cUCCUGCCcCUcCUGCCCcuccUGcuccUGCCCc -3' miRNA: 3'- aAGGGCGGaGA-GACGGG----ACaa--ACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 161035 | 0.67 | 0.736907 |
Target: 5'- gUCCCcuugucaGCCUaaccgUCUGCCCUGcaagGCCUg -3' miRNA: 3'- aAGGG-------CGGAg----AGACGGGACaaa-CGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 115905 | 0.67 | 0.775702 |
Target: 5'- cUCCCGCCUCUCc-CUCUGcgacaCCCg -3' miRNA: 3'- aAGGGCGGAGAGacGGGACaaac-GGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 137781 | 0.67 | 0.773854 |
Target: 5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3' miRNA: 3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 21679 | 0.67 | 0.766411 |
Target: 5'- --gCUGCCUCcCUGCCCcucgGUggGCCa -3' miRNA: 3'- aagGGCGGAGaGACGGGa---CAaaCGGg -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 150057 | 0.67 | 0.773854 |
Target: 5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3' miRNA: 3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 159264 | 0.67 | 0.773854 |
Target: 5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3' miRNA: 3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 48910 | 0.67 | 0.779384 |
Target: 5'- cUCCCGCCUCUUggaugccaucaucCCCUGcUUGggaCCCg -3' miRNA: 3'- aAGGGCGGAGAGac-----------GGGACaAAC---GGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 101016 | 0.67 | 0.775702 |
Target: 5'- gUCCaCGUaggUCgcgGCCCUGgggUUGCCCa -3' miRNA: 3'- aAGG-GCGgagAGa--CGGGACa--AACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 157235 | 0.67 | 0.757004 |
Target: 5'- gUUCUGCCUCuUCUGCuCCaGgcaccagGCCCg -3' miRNA: 3'- aAGGGCGGAG-AGACG-GGaCaaa----CGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 155875 | 0.68 | 0.708525 |
Target: 5'- -gUCUGCCUC-CgGCCUUGccgUGCCCu -3' miRNA: 3'- aaGGGCGGAGaGaCGGGACaa-ACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 75208 | 0.68 | 0.698603 |
Target: 5'- cUCCUGCCcCUcCUGCuCCUGccccuccUGCCCc -3' miRNA: 3'- aAGGGCGGaGA-GACG-GGACaa-----ACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 14472 | 0.68 | 0.668545 |
Target: 5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3' miRNA: 3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 23679 | 0.68 | 0.668545 |
Target: 5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3' miRNA: 3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 26748 | 0.68 | 0.668545 |
Target: 5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3' miRNA: 3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 29817 | 0.68 | 0.668545 |
Target: 5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3' miRNA: 3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 32886 | 0.68 | 0.668545 |
Target: 5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3' miRNA: 3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 151116 | 0.68 | 0.688627 |
Target: 5'- -gCCUGCCcCUCggcgGCCCg---UGCCCc -3' miRNA: 3'- aaGGGCGGaGAGa---CGGGacaaACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 75286 | 0.68 | 0.698603 |
Target: 5'- cUCCUGCCcCUcCUGCuCCUGccccuccUGCCCc -3' miRNA: 3'- aAGGGCGGaGA-GACG-GGACaa-----ACGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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