miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33410 5' -58.5 NC_007605.1 + 143919 0.67 0.773854
Target:  5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3'
miRNA:   3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5'
33410 5' -58.5 NC_007605.1 + 140850 0.67 0.773854
Target:  5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3'
miRNA:   3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5'
33410 5' -58.5 NC_007605.1 + 137781 0.67 0.773854
Target:  5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3'
miRNA:   3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5'
33410 5' -58.5 NC_007605.1 + 161035 0.67 0.736907
Target:  5'- gUCCCcuugucaGCCUaaccgUCUGCCCUGcaagGCCUg -3'
miRNA:   3'- aAGGG-------CGGAg----AGACGGGACaaa-CGGG- -5'
33410 5' -58.5 NC_007605.1 + 20859 0.67 0.747489
Target:  5'- gUCCCGgg-CUCUGCUCUGgcgcgGCCUc -3'
miRNA:   3'- aAGGGCggaGAGACGGGACaaa--CGGG- -5'
33410 5' -58.5 NC_007605.1 + 24509 0.67 0.770142
Target:  5'- --gCCGCCUgUCUGCuugccaaccaaagucCCUGgcUGCUCa -3'
miRNA:   3'- aagGGCGGAgAGACG---------------GGACaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 75325 0.67 0.757004
Target:  5'- cUCCUGCCcCUcCUGCCCcuccUGcuccUGCCCc -3'
miRNA:   3'- aAGGGCGGaGA-GACGGG----ACaa--ACGGG- -5'
33410 5' -58.5 NC_007605.1 + 156195 0.67 0.773854
Target:  5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3'
miRNA:   3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5'
33410 5' -58.5 NC_007605.1 + 115905 0.67 0.775702
Target:  5'- cUCCCGCCUCUCc-CUCUGcgacaCCCg -3'
miRNA:   3'- aAGGGCGGAGAGacGGGACaaac-GGG- -5'
33410 5' -58.5 NC_007605.1 + 159264 0.67 0.773854
Target:  5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3'
miRNA:   3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5'
33410 5' -58.5 NC_007605.1 + 48910 0.67 0.779384
Target:  5'- cUCCCGCCUCUUggaugccaucaucCCCUGcUUGggaCCCg -3'
miRNA:   3'- aAGGGCGGAGAGac-----------GGGACaAAC---GGG- -5'
33410 5' -58.5 NC_007605.1 + 101016 0.67 0.775702
Target:  5'- gUCCaCGUaggUCgcgGCCCUGgggUUGCCCa -3'
miRNA:   3'- aAGG-GCGgagAGa--CGGGACa--AACGGG- -5'
33410 5' -58.5 NC_007605.1 + 157235 0.67 0.757004
Target:  5'- gUUCUGCCUCuUCUGCuCCaGgcaccagGCCCg -3'
miRNA:   3'- aAGGGCGGAG-AGACG-GGaCaaa----CGGG- -5'
33410 5' -58.5 NC_007605.1 + 22941 0.67 0.728169
Target:  5'- cUCCagaGCCcCUUUGCCCcccUGgcgGCCCa -3'
miRNA:   3'- aAGGg--CGGaGAGACGGG---ACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 26111 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 95109 0.66 0.784867
Target:  5'- -cCCCGCCgUCUC--CCCaGUaUGCCCc -3'
miRNA:   3'- aaGGGCGG-AGAGacGGGaCAaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 32249 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 29180 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 23042 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 17830 0.66 0.820099
Target:  5'- -cCCUGCgCUUUgccgaUGCCCUGgccGCCCa -3'
miRNA:   3'- aaGGGCG-GAGAg----ACGGGACaaaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.