Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 33410 | 5' | -58.5 | NC_007605.1 | + | 26111 | 0.66 | 0.784867 |
|
Target: 5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3' miRNA: 3'- aAGGGCGGaGaGACGGGacaaACGGG- -5' |
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| 33410 | 5' | -58.5 | NC_007605.1 | + | 23042 | 0.66 | 0.784867 |
|
Target: 5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3' miRNA: 3'- aAGGGCGGaGaGACGGGacaaACGGG- -5' |
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| 33410 | 5' | -58.5 | NC_007605.1 | + | 19973 | 0.66 | 0.784867 |
|
Target: 5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3' miRNA: 3'- aAGGGCGGaGaGACGGGacaaACGGG- -5' |
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| 33410 | 5' | -58.5 | NC_007605.1 | + | 16905 | 0.66 | 0.784867 |
|
Target: 5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3' miRNA: 3'- aAGGGCGGaGaGACGGGacaaACGGG- -5' |
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| 33410 | 5' | -58.5 | NC_007605.1 | + | 13836 | 0.66 | 0.784867 |
|
Target: 5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3' miRNA: 3'- aAGGGCGGaGaGACGGGacaaACGGG- -5' |
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| 33410 | 5' | -58.5 | NC_007605.1 | + | 32249 | 0.66 | 0.784867 |
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Target: 5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3' miRNA: 3'- aAGGGCGGaGaGACGGGacaaACGGG- -5' |
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| 33410 | 5' | -58.5 | NC_007605.1 | + | 17830 | 0.66 | 0.820099 |
|
Target: 5'- -cCCUGCgCUUUgccgaUGCCCUGgccGCCCa -3' miRNA: 3'- aaGGGCG-GAGAg----ACGGGACaaaCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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