miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33410 5' -58.5 NC_007605.1 + 11800 1.1 0.001411
Target:  5'- aUUCCCGCCUCUCUGCCCUGUUUGCCCg -3'
miRNA:   3'- -AAGGGCGGAGAGACGGGACAAACGGG- -5'
33410 5' -58.5 NC_007605.1 + 124907 0.76 0.280278
Target:  5'- -gCCCGCCUCUCUGgCauccUUGCCCa -3'
miRNA:   3'- aaGGGCGGAGAGACgGgacaAACGGG- -5'
33410 5' -58.5 NC_007605.1 + 91769 0.76 0.286191
Target:  5'- cUUCCCGCUcgCUCUGCUCgGUgucacugUUGCCCg -3'
miRNA:   3'- -AAGGGCGGa-GAGACGGGaCA-------AACGGG- -5'
33410 5' -58.5 NC_007605.1 + 75118 0.72 0.43468
Target:  5'- -cUCCGCCUUUgaGCCCgaggUGCCCa -3'
miRNA:   3'- aaGGGCGGAGAgaCGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 794 0.72 0.461768
Target:  5'- --aCCGCCUCUCUGUCCcc---GCCCc -3'
miRNA:   3'- aagGGCGGAGAGACGGGacaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 1316 0.72 0.461768
Target:  5'- --aCCGCCUCUCUGUCCcc---GCCCc -3'
miRNA:   3'- aagGGCGGAGAGACGGGacaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 1854 0.72 0.461768
Target:  5'- --aCCGCCUCUCUGUCCcc---GCCCc -3'
miRNA:   3'- aagGGCGGAGAGACGGGacaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 256 0.72 0.461768
Target:  5'- --aCCGCCUCUCUGUCCcc---GCCCc -3'
miRNA:   3'- aagGGCGGAGAGACGGGacaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 100517 0.71 0.508785
Target:  5'- -cCCCugGCCUCUCUGaCCCUaga-GCCCa -3'
miRNA:   3'- aaGGG--CGGAGAGAC-GGGAcaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 20292 0.71 0.518434
Target:  5'- -gCCCGCCgugaaCUCUGCCCUucagUGUCUg -3'
miRNA:   3'- aaGGGCGGa----GAGACGGGAcaa-ACGGG- -5'
33410 5' -58.5 NC_007605.1 + 90457 0.71 0.537944
Target:  5'- cUCCCacggGCCUUUUccaguaccuccuUGCCCUGUucuguucguUUGCCCg -3'
miRNA:   3'- aAGGG----CGGAGAG------------ACGGGACA---------AACGGG- -5'
33410 5' -58.5 NC_007605.1 + 115402 0.7 0.567657
Target:  5'- cUCCCGCCgcCUCagUGCCCcccUUUGUCCa -3'
miRNA:   3'- aAGGGCGGa-GAG--ACGGGac-AAACGGG- -5'
33410 5' -58.5 NC_007605.1 + 67493 0.7 0.577658
Target:  5'- cUCCUGCCUgcCUCUGCUCUGguacgUUGgCUu -3'
miRNA:   3'- aAGGGCGGA--GAGACGGGACa----AACgGG- -5'
33410 5' -58.5 NC_007605.1 + 69086 0.7 0.577658
Target:  5'- -aCCUGCCUCUCuuaUGCCUgug--GCCCc -3'
miRNA:   3'- aaGGGCGGAGAG---ACGGGacaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 75658 0.7 0.577658
Target:  5'- cUCCUGCCcCUcCUGCCCcuccUGCCCc -3'
miRNA:   3'- aAGGGCGGaGA-GACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 75394 0.7 0.577658
Target:  5'- cUCCUGCCcCUcCUGCCCcuccUGCCCc -3'
miRNA:   3'- aAGGGCGGaGA-GACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 75577 0.7 0.577658
Target:  5'- cUCCUGCCcCUcCUGCCCcuccUGCCCc -3'
miRNA:   3'- aAGGGCGGaGA-GACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 75712 0.7 0.577658
Target:  5'- cUCCUGCCcCUcCUGCCCcuccUGCCCc -3'
miRNA:   3'- aAGGGCGGaGA-GACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 75445 0.7 0.577658
Target:  5'- cUCCUGCCcCUcCUGCCCcuccUGCCCc -3'
miRNA:   3'- aAGGGCGGaGA-GACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 75496 0.7 0.577658
Target:  5'- cUCCUGCCcCUcCUGCCCcuccUGCCCc -3'
miRNA:   3'- aAGGGCGGaGA-GACGGGacaaACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.