miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33410 5' -58.5 NC_007605.1 + 256 0.72 0.461768
Target:  5'- --aCCGCCUCUCUGUCCcc---GCCCc -3'
miRNA:   3'- aagGGCGGAGAGACGGGacaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 794 0.72 0.461768
Target:  5'- --aCCGCCUCUCUGUCCcc---GCCCc -3'
miRNA:   3'- aagGGCGGAGAGACGGGacaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 1316 0.72 0.461768
Target:  5'- --aCCGCCUCUCUGUCCcc---GCCCc -3'
miRNA:   3'- aagGGCGGAGAGACGGGacaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 1854 0.72 0.461768
Target:  5'- --aCCGCCUCUCUGUCCcc---GCCCc -3'
miRNA:   3'- aagGGCGGAGAGACGGGacaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 11800 1.1 0.001411
Target:  5'- aUUCCCGCCUCUCUGCCCUGUUUGCCCg -3'
miRNA:   3'- -AAGGGCGGAGAGACGGGACAAACGGG- -5'
33410 5' -58.5 NC_007605.1 + 13836 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 14472 0.68 0.668545
Target:  5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3'
miRNA:   3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 16905 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 16945 0.66 0.793898
Target:  5'- aUUCCuCGCCUCUUUGCagcg---GCCCc -3'
miRNA:   3'- -AAGG-GCGGAGAGACGggacaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 17541 0.68 0.668545
Target:  5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3'
miRNA:   3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 17830 0.66 0.820099
Target:  5'- -cCCUGCgCUUUgccgaUGCCCUGgccGCCCa -3'
miRNA:   3'- aaGGGCG-GAGAg----ACGGGACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 19973 0.69 0.607863
Target:  5'- --gCCGCCUgUUUgGCCCUG-UUGCUCa -3'
miRNA:   3'- aagGGCGGAgAGA-CGGGACaAACGGG- -5'
33410 5' -58.5 NC_007605.1 + 19973 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 20292 0.71 0.518434
Target:  5'- -gCCCGCCgugaaCUCUGCCCUucagUGUCUg -3'
miRNA:   3'- aaGGGCGGa----GAGACGGGAcaa-ACGGG- -5'
33410 5' -58.5 NC_007605.1 + 20610 0.68 0.668545
Target:  5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3'
miRNA:   3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 20859 0.67 0.747489
Target:  5'- gUCCCGgg-CUCUGCUCUGgcgcgGCCUc -3'
miRNA:   3'- aAGGGCggaGAGACGGGACaaa--CGGG- -5'
33410 5' -58.5 NC_007605.1 + 21679 0.67 0.766411
Target:  5'- --gCUGCCUCcCUGCCCcucgGUggGCCa -3'
miRNA:   3'- aagGGCGGAGaGACGGGa---CAaaCGGg -5'
33410 5' -58.5 NC_007605.1 + 22941 0.67 0.728169
Target:  5'- cUCCagaGCCcCUUUGCCCcccUGgcgGCCCa -3'
miRNA:   3'- aAGGg--CGGaGAGACGGG---ACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 23042 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 23679 0.68 0.668545
Target:  5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3'
miRNA:   3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.