miRNA display CGI

Results 61 - 67 of 67 are showing below:
Show page: 1 2 3 4

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
33410	5'	-58.5	NC_007605.1	+	151116	0.68	0.688627
	Target:  5'- -gCCUGCCcCUCggcgGCCCg---UGCCCc -3' miRNA:   3'- aaGGGCGGaGAGa---CGGGacaaACGGG- -5'
33410	5'	-58.5	NC_007605.1	+	153126	0.67	0.773854
	Target:  5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3' miRNA:   3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5'
33410	5'	-58.5	NC_007605.1	+	155875	0.68	0.708525
	Target:  5'- -gUCUGCCUC-CgGCCUUGccgUGCCCu -3' miRNA:   3'- aaGGGCGGAGaGaCGGGACaa-ACGGG- -5'
33410	5'	-58.5	NC_007605.1	+	156195	0.67	0.773854
	Target:  5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3' miRNA:   3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5'
33410	5'	-58.5	NC_007605.1	+	157235	0.67	0.757004
	Target:  5'- gUUCUGCCUCuUCUGCuCCaGgcaccagGCCCg -3' miRNA:   3'- aAGGGCGGAG-AGACG-GGaCaaa----CGGG- -5'
33410	5'	-58.5	NC_007605.1	+	159264	0.67	0.773854
	Target:  5'- -cCCUGCCugUCUCUGCCCcccggagggaccggGUgcugggaccucgggUGCCCg -3' miRNA:   3'- aaGGGCGG--AGAGACGGGa-------------CAa-------------ACGGG- -5'
33410	5'	-58.5	NC_007605.1	+	161035	0.67	0.736907
	Target:  5'- gUCCCcuugucaGCCUaaccgUCUGCCCUGcaagGCCUg -3' miRNA:   3'- aAGGG-------CGGAg----AGACGGGACaaa-CGGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home