miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33410 5' -58.5 NC_007605.1 + 16905 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 32886 0.68 0.668545
Target:  5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3'
miRNA:   3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 151116 0.68 0.688627
Target:  5'- -gCCUGCCcCUCggcgGCCCg---UGCCCc -3'
miRNA:   3'- aaGGGCGGaGAGa---CGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 155875 0.68 0.708525
Target:  5'- -gUCUGCCUC-CgGCCUUGccgUGCCCu -3'
miRNA:   3'- aaGGGCGGAGaGaCGGGACaa-ACGGG- -5'
33410 5' -58.5 NC_007605.1 + 22941 0.67 0.728169
Target:  5'- cUCCagaGCCcCUUUGCCCcccUGgcgGCCCa -3'
miRNA:   3'- aAGGg--CGGaGAGACGGG---ACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 157235 0.67 0.757004
Target:  5'- gUUCUGCCUCuUCUGCuCCaGgcaccagGCCCg -3'
miRNA:   3'- aAGGGCGGAG-AGACG-GGaCaaa----CGGG- -5'
33410 5' -58.5 NC_007605.1 + 101016 0.67 0.775702
Target:  5'- gUCCaCGUaggUCgcgGCCCUGgggUUGCCCa -3'
miRNA:   3'- aAGG-GCGgagAGa--CGGGACa--AACGGG- -5'
33410 5' -58.5 NC_007605.1 + 48910 0.67 0.779384
Target:  5'- cUCCCGCCUCUUggaugccaucaucCCCUGcUUGggaCCCg -3'
miRNA:   3'- aAGGGCGGAGAGac-----------GGGACaAAC---GGG- -5'
33410 5' -58.5 NC_007605.1 + 13836 0.66 0.784867
Target:  5'- cUCCCGCC-C-CUGUCCac--UGCCCc -3'
miRNA:   3'- aAGGGCGGaGaGACGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 29817 0.68 0.668545
Target:  5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3'
miRNA:   3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 26748 0.68 0.668545
Target:  5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3'
miRNA:   3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 23679 0.68 0.668545
Target:  5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3'
miRNA:   3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 91769 0.76 0.286191
Target:  5'- cUUCCCGCUcgCUCUGCUCgGUgucacugUUGCCCg -3'
miRNA:   3'- -AAGGGCGGa-GAGACGGGaCA-------AACGGG- -5'
33410 5' -58.5 NC_007605.1 + 75118 0.72 0.43468
Target:  5'- -cUCCGCCUUUgaGCCCgaggUGCCCa -3'
miRNA:   3'- aaGGGCGGAGAgaCGGGacaaACGGG- -5'
33410 5' -58.5 NC_007605.1 + 67493 0.7 0.577658
Target:  5'- cUCCUGCCUgcCUCUGCUCUGguacgUUGgCUu -3'
miRNA:   3'- aAGGGCGGA--GAGACGGGACa----AACgGG- -5'
33410 5' -58.5 NC_007605.1 + 69086 0.7 0.577658
Target:  5'- -aCCUGCCUCUCuuaUGCCUgug--GCCCc -3'
miRNA:   3'- aaGGGCGGAGAG---ACGGGacaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 69184 0.69 0.618988
Target:  5'- -gCCUGCaccaUCUUUGCCCUGUccguggucuccaggGCCCu -3'
miRNA:   3'- aaGGGCGg---AGAGACGGGACAaa------------CGGG- -5'
33410 5' -58.5 NC_007605.1 + 14472 0.68 0.668545
Target:  5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3'
miRNA:   3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 17541 0.68 0.668545
Target:  5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3'
miRNA:   3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5'
33410 5' -58.5 NC_007605.1 + 20610 0.68 0.668545
Target:  5'- cUUCCCucCCUCgUCuUGCCCUGc--GCCCg -3'
miRNA:   3'- -AAGGGc-GGAG-AG-ACGGGACaaaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.