Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33410 | 5' | -58.5 | NC_007605.1 | + | 75577 | 0.7 | 0.577658 |
Target: 5'- cUCCUGCCcCUcCUGCCCcuccUGCCCc -3' miRNA: 3'- aAGGGCGGaGA-GACGGGacaaACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 75658 | 0.7 | 0.577658 |
Target: 5'- cUCCUGCCcCUcCUGCCCcuccUGCCCc -3' miRNA: 3'- aAGGGCGGaGA-GACGGGacaaACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 75712 | 0.7 | 0.577658 |
Target: 5'- cUCCUGCCcCUcCUGCCCcuccUGCCCc -3' miRNA: 3'- aAGGGCGGaGA-GACGGGacaaACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 109971 | 0.7 | 0.597767 |
Target: 5'- -gCUgGCCUCUgUGCCCcGggUGUCCc -3' miRNA: 3'- aaGGgCGGAGAgACGGGaCaaACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 19973 | 0.69 | 0.607863 |
Target: 5'- --gCCGCCUgUUUgGCCCUG-UUGCUCa -3' miRNA: 3'- aagGGCGGAgAGA-CGGGACaAACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 75160 | 0.68 | 0.698603 |
Target: 5'- cUCCUGCCcCUcCUGCuCCUGccccuccUGCCCc -3' miRNA: 3'- aAGGGCGGaGA-GACG-GGACaa-----ACGGG- -5' |
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33410 | 5' | -58.5 | NC_007605.1 | + | 11800 | 1.1 | 0.001411 |
Target: 5'- aUUCCCGCCUCUCUGCCCUGUUUGCCCg -3' miRNA: 3'- -AAGGGCGGAGAGACGGGACAAACGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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