Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33413 | 3' | -55.3 | NC_007605.1 | + | 41183 | 0.71 | 0.668082 |
Target: 5'- -gUCaUGACCUGGCCUgugcCUUgucccGUGGACa -3' miRNA: 3'- ugAG-ACUGGACCGGGa---GAAa----CACCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 123370 | 0.66 | 0.938229 |
Target: 5'- aGCcCUGuGCCUGGCCCUCUcccc-GGCa -3' miRNA: 3'- -UGaGAC-UGGACCGGGAGAaacacCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 143999 | 0.66 | 0.91698 |
Target: 5'- -gUCaUGACCUGGCCUgugCcUUGUcccauGGACa -3' miRNA: 3'- ugAG-ACUGGACCGGGa--GaAACA-----CCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 63382 | 0.67 | 0.898504 |
Target: 5'- --gCUGACCUGGuCCCggaCUU--UGGGCg -3' miRNA: 3'- ugaGACUGGACC-GGGa--GAAacACCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 66089 | 0.67 | 0.89187 |
Target: 5'- -gUCccggGACagGGCCCcCUUUGUGGACc -3' miRNA: 3'- ugAGa---CUGgaCCGGGaGAAACACCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 65523 | 0.67 | 0.877912 |
Target: 5'- cCUCggggugcagGGCCUGGCCgaugUCUUUGcGGACc -3' miRNA: 3'- uGAGa--------CUGGACCGGg---AGAAACaCCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 45902 | 0.68 | 0.855317 |
Target: 5'- aACUCggagGugCUGGCUggagagagggaCUCguaggUGUGGACg -3' miRNA: 3'- -UGAGa---CugGACCGG-----------GAGaa---ACACCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 153882 | 0.69 | 0.813648 |
Target: 5'- gACUC-GAagCUGGCCCUCggggUUGagGGGCg -3' miRNA: 3'- -UGAGaCUg-GACCGGGAGa---AACa-CCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 107083 | 0.7 | 0.748538 |
Target: 5'- cCUCUcGGCCUGGgUCUCggcaGUGGGCu -3' miRNA: 3'- uGAGA-CUGGACCgGGAGaaa-CACCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 123856 | 0.66 | 0.928091 |
Target: 5'- uCUgUGACCUGGCCCa----GcGGACa -3' miRNA: 3'- uGAgACUGGACCGGGagaaaCaCCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 38502 | 0.67 | 0.877912 |
Target: 5'- cGCUCcGACCUGGCCCUUUc---GGcCu -3' miRNA: 3'- -UGAGaCUGGACCGGGAGAaacaCCuG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 16663 | 0.67 | 0.877912 |
Target: 5'- aACUUUGA-CUGGCCCUacauucUGGACa -3' miRNA: 3'- -UGAGACUgGACCGGGAgaaac-ACCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 107157 | 0.68 | 0.855317 |
Target: 5'- uCUCcGGCCUGGCCCgCUgca-GGGCu -3' miRNA: 3'- uGAGaCUGGACCGGGaGAaacaCCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 125779 | 0.68 | 0.830874 |
Target: 5'- cACUCaGAugcccCCgUGGCCUUCUUUGaGGACu -3' miRNA: 3'- -UGAGaCU-----GG-ACCGGGAGAAACaCCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 98190 | 0.72 | 0.626845 |
Target: 5'- gACUCaugcgGGCCUGGgCCgggCUcagUGUGGACg -3' miRNA: 3'- -UGAGa----CUGGACCgGGa--GAa--ACACCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 9894 | 1.1 | 0.002953 |
Target: 5'- uACUCUGACCUGGCCCUCUUUGUGGACg -3' miRNA: 3'- -UGAGACUGGACCGGGAGAAACACCUG- -5' |
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33413 | 3' | -55.3 | NC_007605.1 | + | 20865 | 0.66 | 0.933281 |
Target: 5'- gGCUCUGcUCUGGCgcggCCUCggcUG-GGACa -3' miRNA: 3'- -UGAGACuGGACCG----GGAGaa-ACaCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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