miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33413 5' -53.4 NC_007605.1 + 81384 0.66 0.974286
Target:  5'- gGGGCUCAagGAGGGGcGGCAGCGg---- -3'
miRNA:   3'- -CCCGGGUg-CUUCUC-UCGUUGCaguau -5'
33413 5' -53.4 NC_007605.1 + 12505 0.66 0.971529
Target:  5'- gGGGCCCcugGCgGAGGAGAGCGGgcUCu-- -3'
miRNA:   3'- -CCCGGG---UG-CUUCUCUCGUUgcAGuau -5'
33413 5' -53.4 NC_007605.1 + 112040 0.66 0.968564
Target:  5'- aGGGCCCACauccAAGGGAGUGG-GUCu-- -3'
miRNA:   3'- -CCCGGGUGc---UUCUCUCGUUgCAGuau -5'
33413 5' -53.4 NC_007605.1 + 35210 0.66 0.965387
Target:  5'- cGGGgCCGCGuAGGGuAGCGGgGUCu-- -3'
miRNA:   3'- -CCCgGGUGCuUCUC-UCGUUgCAGuau -5'
33413 5' -53.4 NC_007605.1 + 108197 0.67 0.963375
Target:  5'- gGGGCCCAC-AGGGGugaugaaguuguggaAGCGGCGgUCGg- -3'
miRNA:   3'- -CCCGGGUGcUUCUC---------------UCGUUGC-AGUau -5'
33413 5' -53.4 NC_007605.1 + 140723 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 140825 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 140927 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 142558 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 141029 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 142456 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 142354 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 142252 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 142048 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 141844 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 141946 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 141641 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 141539 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 141437 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 141335 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.