miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33413 5' -53.4 NC_007605.1 + 141335 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 141233 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 141131 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 142660 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 111441 0.67 0.96199
Target:  5'- uGGGCCCACaccAGcGAGCcccuGCGUCcgGa -3'
miRNA:   3'- -CCCGGGUGcu-UCuCUCGu---UGCAGuaU- -5'
33413 5' -53.4 NC_007605.1 + 141641 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 140723 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 140825 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 140927 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 141029 0.67 0.96199
Target:  5'- cGGCCCugGAgcucGGGGGGCGGCc----- -3'
miRNA:   3'- cCCGGGugCU----UCUCUCGUUGcaguau -5'
33413 5' -53.4 NC_007605.1 + 11112 0.67 0.958368
Target:  5'- uGGGaCCuuaGAGGuGGAGCAACGUCu-- -3'
miRNA:   3'- -CCCgGGug-CUUC-UCUCGUUGCAGuau -5'
33413 5' -53.4 NC_007605.1 + 75190 0.67 0.954517
Target:  5'- uGGGCCCACG----GAGCucGCGUUAa- -3'
miRNA:   3'- -CCCGGGUGCuucuCUCGu-UGCAGUau -5'
33413 5' -53.4 NC_007605.1 + 95476 0.67 0.946109
Target:  5'- gGGGCUguUGGAGGGGGCAGgaGUCu-- -3'
miRNA:   3'- -CCCGGguGCUUCUCUCGUUg-CAGuau -5'
33413 5' -53.4 NC_007605.1 + 11615 0.67 0.946109
Target:  5'- cGGCCCA-GAGGAGGGCGcgGUCc-- -3'
miRNA:   3'- cCCGGGUgCUUCUCUCGUugCAGuau -5'
33413 5' -53.4 NC_007605.1 + 74230 0.67 0.941545
Target:  5'- cGGUCCGCGGu--GAGCGGCGUgAg- -3'
miRNA:   3'- cCCGGGUGCUucuCUCGUUGCAgUau -5'
33413 5' -53.4 NC_007605.1 + 109220 0.68 0.936738
Target:  5'- cGGCgCAucauCGAAGAGGGCAGCGg---- -3'
miRNA:   3'- cCCGgGU----GCUUCUCUCGUUGCaguau -5'
33413 5' -53.4 NC_007605.1 + 34825 0.68 0.936738
Target:  5'- aGGCCCgcuauguccuuGCGGuAGAGGGUGGCGUCc-- -3'
miRNA:   3'- cCCGGG-----------UGCU-UCUCUCGUUGCAGuau -5'
33413 5' -53.4 NC_007605.1 + 22900 0.68 0.936738
Target:  5'- aGGGaggCCugGGAGGGGGCGAgcaGUCGc- -3'
miRNA:   3'- -CCCg--GGugCUUCUCUCGUUg--CAGUau -5'
33413 5' -53.4 NC_007605.1 + 77495 0.68 0.915055
Target:  5'- uGGCCaCugGggGccuGGGGCGACGUUg-- -3'
miRNA:   3'- cCCGG-GugCuuC---UCUCGUUGCAGuau -5'
33413 5' -53.4 NC_007605.1 + 126178 0.69 0.908405
Target:  5'- gGGGCCCggcccggccaagaGCGAAGAcgagGAGUcugAGCGUCGa- -3'
miRNA:   3'- -CCCGGG-------------UGCUUCU----CUCG---UUGCAGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.