miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33414 3' -58.2 NC_007605.1 + 73466 0.66 0.861045
Target:  5'- uCAUCGGgGucGGGGUCC-CACguguauggGGCCGg -3'
miRNA:   3'- -GUAGCUgUucCCCCAGGaGUG--------CCGGU- -5'
33414 3' -58.2 NC_007605.1 + 61976 0.66 0.861045
Target:  5'- gCcgCGACGGGGGGcguuuGUCCccCGCuGGCCu -3'
miRNA:   3'- -GuaGCUGUUCCCC-----CAGGa-GUG-CCGGu -5'
33414 3' -58.2 NC_007605.1 + 63109 0.66 0.8588
Target:  5'- ---aGugGAGGGGGgagCUUCagcuggucugggugGCGGCCGc -3'
miRNA:   3'- guagCugUUCCCCCa--GGAG--------------UGCCGGU- -5'
33414 3' -58.2 NC_007605.1 + 67887 0.66 0.853494
Target:  5'- --gCGgccACAAGGGGGUUC-C-CGGCCu -3'
miRNA:   3'- guaGC---UGUUCCCCCAGGaGuGCCGGu -5'
33414 3' -58.2 NC_007605.1 + 157849 0.66 0.84887
Target:  5'- aCAUCugGACAAaguuugggggcgcccGGGGGUCgggCugGGCCGc -3'
miRNA:   3'- -GUAG--CUGUU---------------CCCCCAGga-GugCCGGU- -5'
33414 3' -58.2 NC_007605.1 + 154780 0.66 0.84887
Target:  5'- aCAUCugGACAAaguuugggggcgcccGGGGGUCgggCugGGCCGc -3'
miRNA:   3'- -GUAG--CUGUU---------------CCCCCAGga-GugCCGGU- -5'
33414 3' -58.2 NC_007605.1 + 151711 0.66 0.84887
Target:  5'- aCAUCugGACAAaguuugggggcgcccGGGGGUCgggCugGGCCGc -3'
miRNA:   3'- -GUAG--CUGUU---------------CCCCCAGga-GugCCGGU- -5'
33414 3' -58.2 NC_007605.1 + 136367 0.66 0.84887
Target:  5'- aCAUCugGACAAaguuugggggcgcccGGGGGUCgggCugGGCCGc -3'
miRNA:   3'- -GUAG--CUGUU---------------CCCCCAGga-GugCCGGU- -5'
33414 3' -58.2 NC_007605.1 + 139436 0.66 0.84887
Target:  5'- aCAUCugGACAAaguuugggggcgcccGGGGGUCgggCugGGCCGc -3'
miRNA:   3'- -GUAG--CUGUU---------------CCCCCAGga-GugCCGGU- -5'
33414 3' -58.2 NC_007605.1 + 145574 0.66 0.84887
Target:  5'- aCAUCugGACAAaguuugggggcgcccGGGGGUCgggCugGGCCGc -3'
miRNA:   3'- -GUAG--CUGUU---------------CCCCCAGga-GugCCGGU- -5'
33414 3' -58.2 NC_007605.1 + 142505 0.66 0.84887
Target:  5'- aCAUCugGACAAaguuugggggcgcccGGGGGUCgggCugGGCCGc -3'
miRNA:   3'- -GUAG--CUGUU---------------CCCCCAGga-GugCCGGU- -5'
33414 3' -58.2 NC_007605.1 + 148643 0.66 0.84887
Target:  5'- aCAUCugGACAAaguuugggggcgcccGGGGGUCgggCugGGCCGc -3'
miRNA:   3'- -GUAG--CUGUU---------------CCCCCAGga-GugCCGGU- -5'
33414 3' -58.2 NC_007605.1 + 38335 0.66 0.827249
Target:  5'- --cCGugGAGGGGGaCCUgACcugcaugcucuccaGGCCAu -3'
miRNA:   3'- guaGCugUUCCCCCaGGAgUG--------------CCGGU- -5'
33414 3' -58.2 NC_007605.1 + 76536 0.67 0.795646
Target:  5'- --aCGGCGGGGGaGGuuUCCUCAggcuUGGCUAa -3'
miRNA:   3'- guaGCUGUUCCC-CC--AGGAGU----GCCGGU- -5'
33414 3' -58.2 NC_007605.1 + 157431 0.67 0.795646
Target:  5'- --aCGGCGGcGGGGGUgCUCccGCgGGCCGc -3'
miRNA:   3'- guaGCUGUU-CCCCCAgGAG--UG-CCGGU- -5'
33414 3' -58.2 NC_007605.1 + 16406 0.67 0.777734
Target:  5'- aUAUCGAguGucuGGGGGaggagggcuUCCcCACGGCCAc -3'
miRNA:   3'- -GUAGCUguU---CCCCC---------AGGaGUGCCGGU- -5'
33414 3' -58.2 NC_007605.1 + 123954 0.68 0.758393
Target:  5'- gAUCGGCAcccGGGGcugaUCCUCgaccccuGCGGCCAc -3'
miRNA:   3'- gUAGCUGUu--CCCCc---AGGAG-------UGCCGGU- -5'
33414 3' -58.2 NC_007605.1 + 109227 0.68 0.749955
Target:  5'- uCAUCGAaGAGGGcagcggggaGGUgCUCGCGGUCu -3'
miRNA:   3'- -GUAGCUgUUCCC---------CCAgGAGUGCCGGu -5'
33414 3' -58.2 NC_007605.1 + 58434 0.68 0.740487
Target:  5'- gCAUaaaGAUgcGGGGGUCCUCugucucaaaGGCCu -3'
miRNA:   3'- -GUAg--CUGuuCCCCCAGGAGug-------CCGGu -5'
33414 3' -58.2 NC_007605.1 + 115915 0.68 0.740487
Target:  5'- --aCGAgGAGGgGGGUCC-CGaGGCCAc -3'
miRNA:   3'- guaGCUgUUCC-CCCAGGaGUgCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.