Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33414 | 3' | -58.2 | NC_007605.1 | + | 145574 | 0.66 | 0.84887 |
Target: 5'- aCAUCugGACAAaguuugggggcgcccGGGGGUCgggCugGGCCGc -3' miRNA: 3'- -GUAG--CUGUU---------------CCCCCAGga-GugCCGGU- -5' |
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33414 | 3' | -58.2 | NC_007605.1 | + | 142505 | 0.66 | 0.84887 |
Target: 5'- aCAUCugGACAAaguuugggggcgcccGGGGGUCgggCugGGCCGc -3' miRNA: 3'- -GUAG--CUGUU---------------CCCCCAGga-GugCCGGU- -5' |
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33414 | 3' | -58.2 | NC_007605.1 | + | 139436 | 0.66 | 0.84887 |
Target: 5'- aCAUCugGACAAaguuugggggcgcccGGGGGUCgggCugGGCCGc -3' miRNA: 3'- -GUAG--CUGUU---------------CCCCCAGga-GugCCGGU- -5' |
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33414 | 3' | -58.2 | NC_007605.1 | + | 136367 | 0.66 | 0.84887 |
Target: 5'- aCAUCugGACAAaguuugggggcgcccGGGGGUCgggCugGGCCGc -3' miRNA: 3'- -GUAG--CUGUU---------------CCCCCAGga-GugCCGGU- -5' |
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33414 | 3' | -58.2 | NC_007605.1 | + | 157849 | 0.66 | 0.84887 |
Target: 5'- aCAUCugGACAAaguuugggggcgcccGGGGGUCgggCugGGCCGc -3' miRNA: 3'- -GUAG--CUGUU---------------CCCCCAGga-GugCCGGU- -5' |
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33414 | 3' | -58.2 | NC_007605.1 | + | 67887 | 0.66 | 0.853494 |
Target: 5'- --gCGgccACAAGGGGGUUC-C-CGGCCu -3' miRNA: 3'- guaGC---UGUUCCCCCAGGaGuGCCGGu -5' |
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33414 | 3' | -58.2 | NC_007605.1 | + | 63109 | 0.66 | 0.8588 |
Target: 5'- ---aGugGAGGGGGgagCUUCagcuggucugggugGCGGCCGc -3' miRNA: 3'- guagCugUUCCCCCa--GGAG--------------UGCCGGU- -5' |
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33414 | 3' | -58.2 | NC_007605.1 | + | 61976 | 0.66 | 0.861045 |
Target: 5'- gCcgCGACGGGGGGcguuuGUCCccCGCuGGCCu -3' miRNA: 3'- -GuaGCUGUUCCCC-----CAGGa-GUG-CCGGu -5' |
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33414 | 3' | -58.2 | NC_007605.1 | + | 73466 | 0.66 | 0.861045 |
Target: 5'- uCAUCGGgGucGGGGUCC-CACguguauggGGCCGg -3' miRNA: 3'- -GUAGCUgUucCCCCAGGaGUG--------CCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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