miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33414 5' -60.5 NC_007605.1 + 152784 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 146647 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 143578 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 140509 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 64514 0.66 0.763233
Target:  5'- aGGaUGGccaaaaacaGCAcgguUGGGGAGCCCAC-UGCc -3'
miRNA:   3'- -CC-ACCa--------CGU----ACCCCUCGGGUGgACGc -5'
33414 5' -60.5 NC_007605.1 + 158922 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 137440 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 155853 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 149715 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 8189 0.66 0.757723
Target:  5'- gGGUGG-GCAagcUGGuGGAGCUgcuggagaagcagaGCCUGCa -3'
miRNA:   3'- -CCACCaCGU---ACC-CCUCGGg-------------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 122456 0.66 0.744727
Target:  5'- gGGUGG-GCuUGGGcAGCCgGCgUGCc -3'
miRNA:   3'- -CCACCaCGuACCCcUCGGgUGgACGc -5'
33414 5' -60.5 NC_007605.1 + 57670 0.66 0.735332
Target:  5'- gGGUGGUGCcUGGuaugcagaaGGGGCCCugUacaUGUu -3'
miRNA:   3'- -CCACCACGuACC---------CCUCGGGugG---ACGc -5'
33414 5' -60.5 NC_007605.1 + 58953 0.66 0.716301
Target:  5'- cGUGaauuGUGCccaccagaGGGuGAGCCCACCUGUc -3'
miRNA:   3'- cCAC----CACGua------CCC-CUCGGGUGGACGc -5'
33414 5' -60.5 NC_007605.1 + 171313 0.66 0.716301
Target:  5'- uGGUGGggGCGggagcGGGGGGCggcgcgggaGCCUGCa -3'
miRNA:   3'- -CCACCa-CGUa----CCCCUCGgg-------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 170775 0.66 0.716301
Target:  5'- uGGUGGggGCGggagcGGGGGGCggcgcgggaGCCUGCa -3'
miRNA:   3'- -CCACCa-CGUa----CCCCUCGgg-------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 170253 0.66 0.716301
Target:  5'- uGGUGGggGCGggagcGGGGGGCggcgcgggaGCCUGCa -3'
miRNA:   3'- -CCACCa-CGUa----CCCCUCGgg-------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 169715 0.66 0.716301
Target:  5'- uGGUGGggGCGggagcGGGGGGCggcgcgggaGCCUGCa -3'
miRNA:   3'- -CCACCa-CGUa----CCCCUCGgg-------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 134567 0.66 0.716301
Target:  5'- cGGUGuUGCccUGGGGcGCCCcucgcccauGCUUGCGg -3'
miRNA:   3'- -CCACcACGu-ACCCCuCGGG---------UGGACGC- -5'
33414 5' -60.5 NC_007605.1 + 57581 0.67 0.706681
Target:  5'- cGUGGUG-GUGGGG-GCUgCugCUGCa -3'
miRNA:   3'- cCACCACgUACCCCuCGG-GugGACGc -5'
33414 5' -60.5 NC_007605.1 + 91530 0.67 0.706681
Target:  5'- gGGUGGgaGCAUGGgucgugcuGGAGCugacCCACCgGCa -3'
miRNA:   3'- -CCACCa-CGUACC--------CCUCG----GGUGGaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.