miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33414 5' -60.5 NC_007605.1 + 98169 0.67 0.697003
Target:  5'- aGGacauGUGCAUGGccuGGGCCCGCUuuUGCGa -3'
miRNA:   3'- -CCac--CACGUACCc--CUCGGGUGG--ACGC- -5'
33414 5' -60.5 NC_007605.1 + 169466 0.67 0.687273
Target:  5'- -cUGGgGCAUGGGGGGCCgCGcauuCCUGg- -3'
miRNA:   3'- ccACCaCGUACCCCUCGG-GU----GGACgc -5'
33414 5' -60.5 NC_007605.1 + 42801 0.67 0.687273
Target:  5'- --gGGUGCuguggcUGGGGAGCcCCGCCa--- -3'
miRNA:   3'- ccaCCACGu-----ACCCCUCG-GGUGGacgc -5'
33414 5' -60.5 NC_007605.1 + 86375 0.67 0.667696
Target:  5'- --gGGUuCAUGGGGgccaucuaaGGCCCACgUGUGa -3'
miRNA:   3'- ccaCCAcGUACCCC---------UCGGGUGgACGC- -5'
33414 5' -60.5 NC_007605.1 + 122162 0.67 0.657863
Target:  5'- -cUGGUGCAUGGuGGcAGCC-ACUcGCGg -3'
miRNA:   3'- ccACCACGUACC-CC-UCGGgUGGaCGC- -5'
33414 5' -60.5 NC_007605.1 + 47865 0.68 0.648011
Target:  5'- cGGUGGUGgGUGuGGAGCCgugGCCUuuuGCa -3'
miRNA:   3'- -CCACCACgUACcCCUCGGg--UGGA---CGc -5'
33414 5' -60.5 NC_007605.1 + 126266 0.68 0.648011
Target:  5'- cGGuUGGUGCccGUGGGGccugGGuUUCGCCUGCu -3'
miRNA:   3'- -CC-ACCACG--UACCCC----UC-GGGUGGACGc -5'
33414 5' -60.5 NC_007605.1 + 63618 0.68 0.638147
Target:  5'- cGGUGGaGUAUgcuucgucGGGGGGCUgGgCCUGCa -3'
miRNA:   3'- -CCACCaCGUA--------CCCCUCGGgU-GGACGc -5'
33414 5' -60.5 NC_007605.1 + 108869 0.68 0.608557
Target:  5'- -uUGcUGCugucUGGGGAcgaccccgcuGCCCGCCUGCGc -3'
miRNA:   3'- ccACcACGu---ACCCCU----------CGGGUGGACGC- -5'
33414 5' -60.5 NC_007605.1 + 60275 0.68 0.598718
Target:  5'- gGGUGGccgugucgGcCGUGGccaGGGCCCACCUGgCGg -3'
miRNA:   3'- -CCACCa-------C-GUACCc--CUCGGGUGGAC-GC- -5'
33414 5' -60.5 NC_007605.1 + 48461 0.69 0.579114
Target:  5'- cGUGGggGCcgGGGG-GCCCuGCCUGa- -3'
miRNA:   3'- cCACCa-CGuaCCCCuCGGG-UGGACgc -5'
33414 5' -60.5 NC_007605.1 + 110110 0.69 0.569362
Target:  5'- cGUGuG-GCccGGGcGGCCUACCUGCGg -3'
miRNA:   3'- cCAC-CaCGuaCCCcUCGGGUGGACGC- -5'
33414 5' -60.5 NC_007605.1 + 72430 0.69 0.568389
Target:  5'- uGUGGUaGCAgaagguuuUGGGGgccggccAGCCCACgUGCa -3'
miRNA:   3'- cCACCA-CGU--------ACCCC-------UCGGGUGgACGc -5'
33414 5' -60.5 NC_007605.1 + 15639 0.69 0.559651
Target:  5'- gGGUGGUGgAUGugcGGGGGCCuCAgcccccCCUGUGc -3'
miRNA:   3'- -CCACCACgUAC---CCCUCGG-GU------GGACGC- -5'
33414 5' -60.5 NC_007605.1 + 128066 0.7 0.511901
Target:  5'- gGGUGGaaGCAUGGGG-Gaa-ACCUGCGa -3'
miRNA:   3'- -CCACCa-CGUACCCCuCgggUGGACGC- -5'
33414 5' -60.5 NC_007605.1 + 108834 0.71 0.456979
Target:  5'- --aGGUGgAcGGGGGGCUCGCCcGCGu -3'
miRNA:   3'- ccaCCACgUaCCCCUCGGGUGGaCGC- -5'
33414 5' -60.5 NC_007605.1 + 170525 0.71 0.430725
Target:  5'- cGUGGgGCAUGGGGGGCCgCGcauuCCUGg- -3'
miRNA:   3'- cCACCaCGUACCCCUCGG-GU----GGACgc -5'
33414 5' -60.5 NC_007605.1 + 86502 0.73 0.364512
Target:  5'- cGGUGGUGUcugcaugGUGGcGGGuGCCCACUgGCGc -3'
miRNA:   3'- -CCACCACG-------UACC-CCU-CGGGUGGaCGC- -5'
33414 5' -60.5 NC_007605.1 + 170001 0.75 0.268204
Target:  5'- gGGUGGgGCAUGGGGGGCCgCGcauuCCUGg- -3'
miRNA:   3'- -CCACCaCGUACCCCUCGG-GU----GGACgc -5'
33414 5' -60.5 NC_007605.1 + 171061 0.75 0.268204
Target:  5'- gGGUGGgGCAUGGGGGGCCgCGcauuCCUGg- -3'
miRNA:   3'- -CCACCaCGUACCCCUCGG-GU----GGACgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.