miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33414 5' -60.5 NC_007605.1 + 8189 0.66 0.757723
Target:  5'- gGGUGG-GCAagcUGGuGGAGCUgcuggagaagcagaGCCUGCa -3'
miRNA:   3'- -CCACCaCGU---ACC-CCUCGGg-------------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 9538 1.11 0.000976
Target:  5'- aGGUGGUGCAUGGGGAGCCCACCUGCGa -3'
miRNA:   3'- -CCACCACGUACCCCUCGGGUGGACGC- -5'
33414 5' -60.5 NC_007605.1 + 15639 0.69 0.559651
Target:  5'- gGGUGGUGgAUGugcGGGGGCCuCAgcccccCCUGUGc -3'
miRNA:   3'- -CCACCACgUAC---CCCUCGG-GU------GGACGC- -5'
33414 5' -60.5 NC_007605.1 + 42801 0.67 0.687273
Target:  5'- --gGGUGCuguggcUGGGGAGCcCCGCCa--- -3'
miRNA:   3'- ccaCCACGu-----ACCCCUCG-GGUGGacgc -5'
33414 5' -60.5 NC_007605.1 + 47865 0.68 0.648011
Target:  5'- cGGUGGUGgGUGuGGAGCCgugGCCUuuuGCa -3'
miRNA:   3'- -CCACCACgUACcCCUCGGg--UGGA---CGc -5'
33414 5' -60.5 NC_007605.1 + 48461 0.69 0.579114
Target:  5'- cGUGGggGCcgGGGG-GCCCuGCCUGa- -3'
miRNA:   3'- cCACCa-CGuaCCCCuCGGG-UGGACgc -5'
33414 5' -60.5 NC_007605.1 + 57581 0.67 0.706681
Target:  5'- cGUGGUG-GUGGGG-GCUgCugCUGCa -3'
miRNA:   3'- cCACCACgUACCCCuCGG-GugGACGc -5'
33414 5' -60.5 NC_007605.1 + 57670 0.66 0.735332
Target:  5'- gGGUGGUGCcUGGuaugcagaaGGGGCCCugUacaUGUu -3'
miRNA:   3'- -CCACCACGuACC---------CCUCGGGugG---ACGc -5'
33414 5' -60.5 NC_007605.1 + 58953 0.66 0.716301
Target:  5'- cGUGaauuGUGCccaccagaGGGuGAGCCCACCUGUc -3'
miRNA:   3'- cCAC----CACGua------CCC-CUCGGGUGGACGc -5'
33414 5' -60.5 NC_007605.1 + 60275 0.68 0.598718
Target:  5'- gGGUGGccgugucgGcCGUGGccaGGGCCCACCUGgCGg -3'
miRNA:   3'- -CCACCa-------C-GUACCc--CUCGGGUGGAC-GC- -5'
33414 5' -60.5 NC_007605.1 + 63618 0.68 0.638147
Target:  5'- cGGUGGaGUAUgcuucgucGGGGGGCUgGgCCUGCa -3'
miRNA:   3'- -CCACCaCGUA--------CCCCUCGGgU-GGACGc -5'
33414 5' -60.5 NC_007605.1 + 64514 0.66 0.763233
Target:  5'- aGGaUGGccaaaaacaGCAcgguUGGGGAGCCCAC-UGCc -3'
miRNA:   3'- -CC-ACCa--------CGU----ACCCCUCGGGUGgACGc -5'
33414 5' -60.5 NC_007605.1 + 72430 0.69 0.568389
Target:  5'- uGUGGUaGCAgaagguuuUGGGGgccggccAGCCCACgUGCa -3'
miRNA:   3'- cCACCA-CGU--------ACCCC-------UCGGGUGgACGc -5'
33414 5' -60.5 NC_007605.1 + 86375 0.67 0.667696
Target:  5'- --gGGUuCAUGGGGgccaucuaaGGCCCACgUGUGa -3'
miRNA:   3'- ccaCCAcGUACCCC---------UCGGGUGgACGC- -5'
33414 5' -60.5 NC_007605.1 + 86502 0.73 0.364512
Target:  5'- cGGUGGUGUcugcaugGUGGcGGGuGCCCACUgGCGc -3'
miRNA:   3'- -CCACCACG-------UACC-CCU-CGGGUGGaCGC- -5'
33414 5' -60.5 NC_007605.1 + 91530 0.67 0.706681
Target:  5'- gGGUGGgaGCAUGGgucgugcuGGAGCugacCCACCgGCa -3'
miRNA:   3'- -CCACCa-CGUACC--------CCUCG----GGUGGaCGc -5'
33414 5' -60.5 NC_007605.1 + 98169 0.67 0.697003
Target:  5'- aGGacauGUGCAUGGccuGGGCCCGCUuuUGCGa -3'
miRNA:   3'- -CCac--CACGUACCc--CUCGGGUGG--ACGC- -5'
33414 5' -60.5 NC_007605.1 + 108834 0.71 0.456979
Target:  5'- --aGGUGgAcGGGGGGCUCGCCcGCGu -3'
miRNA:   3'- ccaCCACgUaCCCCUCGGGUGGaCGC- -5'
33414 5' -60.5 NC_007605.1 + 108869 0.68 0.608557
Target:  5'- -uUGcUGCugucUGGGGAcgaccccgcuGCCCGCCUGCGc -3'
miRNA:   3'- ccACcACGu---ACCCCU----------CGGGUGGACGC- -5'
33414 5' -60.5 NC_007605.1 + 110110 0.69 0.569362
Target:  5'- cGUGuG-GCccGGGcGGCCUACCUGCGg -3'
miRNA:   3'- cCAC-CaCGuaCCCcUCGGGUGGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.