miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33414 5' -60.5 NC_007605.1 + 122162 0.67 0.657863
Target:  5'- -cUGGUGCAUGGuGGcAGCC-ACUcGCGg -3'
miRNA:   3'- ccACCACGUACC-CC-UCGGgUGGaCGC- -5'
33414 5' -60.5 NC_007605.1 + 122456 0.66 0.744727
Target:  5'- gGGUGG-GCuUGGGcAGCCgGCgUGCc -3'
miRNA:   3'- -CCACCaCGuACCCcUCGGgUGgACGc -5'
33414 5' -60.5 NC_007605.1 + 126266 0.68 0.648011
Target:  5'- cGGuUGGUGCccGUGGGGccugGGuUUCGCCUGCu -3'
miRNA:   3'- -CC-ACCACG--UACCCC----UC-GGGUGGACGc -5'
33414 5' -60.5 NC_007605.1 + 128066 0.7 0.511901
Target:  5'- gGGUGGaaGCAUGGGG-Gaa-ACCUGCGa -3'
miRNA:   3'- -CCACCa-CGUACCCCuCgggUGGACGC- -5'
33414 5' -60.5 NC_007605.1 + 134567 0.66 0.716301
Target:  5'- cGGUGuUGCccUGGGGcGCCCcucgcccauGCUUGCGg -3'
miRNA:   3'- -CCACcACGu-ACCCCuCGGG---------UGGACGC- -5'
33414 5' -60.5 NC_007605.1 + 137440 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 140509 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 143578 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 146647 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 149715 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 152784 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 155853 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 158922 0.66 0.763233
Target:  5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3'
miRNA:   3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 169466 0.67 0.687273
Target:  5'- -cUGGgGCAUGGGGGGCCgCGcauuCCUGg- -3'
miRNA:   3'- ccACCaCGUACCCCUCGG-GU----GGACgc -5'
33414 5' -60.5 NC_007605.1 + 169715 0.66 0.716301
Target:  5'- uGGUGGggGCGggagcGGGGGGCggcgcgggaGCCUGCa -3'
miRNA:   3'- -CCACCa-CGUa----CCCCUCGgg-------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 170001 0.75 0.268204
Target:  5'- gGGUGGgGCAUGGGGGGCCgCGcauuCCUGg- -3'
miRNA:   3'- -CCACCaCGUACCCCUCGG-GU----GGACgc -5'
33414 5' -60.5 NC_007605.1 + 170253 0.66 0.716301
Target:  5'- uGGUGGggGCGggagcGGGGGGCggcgcgggaGCCUGCa -3'
miRNA:   3'- -CCACCa-CGUa----CCCCUCGgg-------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 170525 0.71 0.430725
Target:  5'- cGUGGgGCAUGGGGGGCCgCGcauuCCUGg- -3'
miRNA:   3'- cCACCaCGUACCCCUCGG-GU----GGACgc -5'
33414 5' -60.5 NC_007605.1 + 170775 0.66 0.716301
Target:  5'- uGGUGGggGCGggagcGGGGGGCggcgcgggaGCCUGCa -3'
miRNA:   3'- -CCACCa-CGUa----CCCCUCGgg-------UGGACGc -5'
33414 5' -60.5 NC_007605.1 + 171061 0.75 0.268204
Target:  5'- gGGUGGgGCAUGGGGGGCCgCGcauuCCUGg- -3'
miRNA:   3'- -CCACCaCGUACCCCUCGG-GU----GGACgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.