Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33414 | 5' | -60.5 | NC_007605.1 | + | 64514 | 0.66 | 0.763233 |
Target: 5'- aGGaUGGccaaaaacaGCAcgguUGGGGAGCCCAC-UGCc -3' miRNA: 3'- -CC-ACCa--------CGU----ACCCCUCGGGUGgACGc -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 137440 | 0.66 | 0.763233 |
Target: 5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3' miRNA: 3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 140509 | 0.66 | 0.763233 |
Target: 5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3' miRNA: 3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 143578 | 0.66 | 0.763233 |
Target: 5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3' miRNA: 3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 146647 | 0.66 | 0.763233 |
Target: 5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3' miRNA: 3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 149715 | 0.66 | 0.763233 |
Target: 5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3' miRNA: 3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 152784 | 0.66 | 0.763233 |
Target: 5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3' miRNA: 3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 155853 | 0.66 | 0.763233 |
Target: 5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3' miRNA: 3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 158922 | 0.66 | 0.763233 |
Target: 5'- --cGG-GUcUGGGGGGCCUgugguggugaGCCUGCu -3' miRNA: 3'- ccaCCaCGuACCCCUCGGG----------UGGACGc -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 122456 | 0.66 | 0.744727 |
Target: 5'- gGGUGG-GCuUGGGcAGCCgGCgUGCc -3' miRNA: 3'- -CCACCaCGuACCCcUCGGgUGgACGc -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 57670 | 0.66 | 0.735332 |
Target: 5'- gGGUGGUGCcUGGuaugcagaaGGGGCCCugUacaUGUu -3' miRNA: 3'- -CCACCACGuACC---------CCUCGGGugG---ACGc -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 86502 | 0.73 | 0.364512 |
Target: 5'- cGGUGGUGUcugcaugGUGGcGGGuGCCCACUgGCGc -3' miRNA: 3'- -CCACCACG-------UACC-CCU-CGGGUGGaCGC- -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 108834 | 0.71 | 0.456979 |
Target: 5'- --aGGUGgAcGGGGGGCUCGCCcGCGu -3' miRNA: 3'- ccaCCACgUaCCCCUCGGGUGGaCGC- -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 128066 | 0.7 | 0.511901 |
Target: 5'- gGGUGGaaGCAUGGGG-Gaa-ACCUGCGa -3' miRNA: 3'- -CCACCa-CGUACCCCuCgggUGGACGC- -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 15639 | 0.69 | 0.559651 |
Target: 5'- gGGUGGUGgAUGugcGGGGGCCuCAgcccccCCUGUGc -3' miRNA: 3'- -CCACCACgUAC---CCCUCGG-GU------GGACGC- -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 110110 | 0.69 | 0.569362 |
Target: 5'- cGUGuG-GCccGGGcGGCCUACCUGCGg -3' miRNA: 3'- cCAC-CaCGuaCCCcUCGGGUGGACGC- -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 108869 | 0.68 | 0.608557 |
Target: 5'- -uUGcUGCugucUGGGGAcgaccccgcuGCCCGCCUGCGc -3' miRNA: 3'- ccACcACGu---ACCCCU----------CGGGUGGACGC- -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 42801 | 0.67 | 0.687273 |
Target: 5'- --gGGUGCuguggcUGGGGAGCcCCGCCa--- -3' miRNA: 3'- ccaCCACGu-----ACCCCUCG-GGUGGacgc -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 91530 | 0.67 | 0.706681 |
Target: 5'- gGGUGGgaGCAUGGgucgugcuGGAGCugacCCACCgGCa -3' miRNA: 3'- -CCACCa-CGUACC--------CCUCG----GGUGGaCGc -5' |
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33414 | 5' | -60.5 | NC_007605.1 | + | 58953 | 0.66 | 0.716301 |
Target: 5'- cGUGaauuGUGCccaccagaGGGuGAGCCCACCUGUc -3' miRNA: 3'- cCAC----CACGua------CCC-CUCGGGUGGACGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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