Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 33415 | 3' | -56 | NC_007605.1 | + | 143959 | 0.67 | 0.882101 |
|
Target: 5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3' miRNA: 3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5' |
|||||||
| 33415 | 3' | -56 | NC_007605.1 | + | 140890 | 0.67 | 0.882101 |
|
Target: 5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3' miRNA: 3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5' |
|||||||
| 33415 | 3' | -56 | NC_007605.1 | + | 137821 | 0.67 | 0.882101 |
|
Target: 5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3' miRNA: 3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5' |
|||||||
| 33415 | 3' | -56 | NC_007605.1 | + | 20881 | 0.68 | 0.859571 |
|
Target: 5'- gGCCUCGGCUGgGACacgggaCGUGGUCggcuggcaccaggCCUGg -3' miRNA: 3'- -CGGAGUUGAUgCUGa-----GCACCGG-------------GGAC- -5' |
|||||||
| 33415 | 3' | -56 | NC_007605.1 | + | 56970 | 0.68 | 0.850322 |
|
Target: 5'- gGCCUCGGCcugggguaaggugauCGACUCcaGGCCCCc- -3' miRNA: 3'- -CGGAGUUGau-------------GCUGAGcaCCGGGGac -5' |
|||||||
| 33415 | 3' | -56 | NC_007605.1 | + | 48014 | 0.71 | 0.688627 |
|
Target: 5'- aGCCUCAAC-GCGGC-CccGGCCCCg- -3' miRNA: 3'- -CGGAGUUGaUGCUGaGcaCCGGGGac -5' |
|||||||
| 33415 | 3' | -56 | NC_007605.1 | + | 120963 | 0.72 | 0.616964 |
|
Target: 5'- cGCCUCcccacggccgucgGGCUGCGACccCGUGcGCCCgUGg -3' miRNA: 3'- -CGGAG-------------UUGAUGCUGa-GCAC-CGGGgAC- -5' |
|||||||
| 33415 | 3' | -56 | NC_007605.1 | + | 8395 | 1.1 | 0.002965 |
|
Target: 5'- aGCCUCAACUACGACUCGUGGCCCCUGu -3' miRNA: 3'- -CGGAGUUGAUGCUGAGCACCGGGGAC- -5' |
|||||||
| 33415 | 3' | -56 | NC_007605.1 | + | 169297 | 0.66 | 0.919691 |
|
Target: 5'- gGCCUCGugUcaGCGGuCUC-UGGCCCg-- -3' miRNA: 3'- -CGGAGUugA--UGCU-GAGcACCGGGgac -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home