Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33415 | 5' | -57.7 | NC_007605.1 | + | 40305 | 0.71 | 0.5997 |
Target: 5'- aCCAGGGGCCCGgcggGGgUGgGgggUGCg -3' miRNA: 3'- aGGUCUCCGGGCaca-CCgACgCa--AUG- -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 77500 | 0.66 | 0.869053 |
Target: 5'- aCUGGGGGCCUGg--GGC-GaCGUUGCa -3' miRNA: 3'- aGGUCUCCGGGCacaCCGaC-GCAAUG- -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 171182 | 0.66 | 0.861627 |
Target: 5'- gUCCGcGGGCuCCGgg-GGCUGCGg--- -3' miRNA: 3'- -AGGUcUCCG-GGCacaCCGACGCaaug -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 170122 | 0.66 | 0.861627 |
Target: 5'- gUCCGcGGGCuCCGgg-GGCUGCGg--- -3' miRNA: 3'- -AGGUcUCCG-GGCacaCCGACGCaaug -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 169585 | 0.66 | 0.861627 |
Target: 5'- gUCCGcGGGCuCCGgg-GGCUGCGg--- -3' miRNA: 3'- -AGGUcUCCG-GGCacaCCGACGCaaug -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 66014 | 0.66 | 0.853998 |
Target: 5'- cCCGGAGGCUC-UGcGGCaGCGcUACc -3' miRNA: 3'- aGGUCUCCGGGcACaCCGaCGCaAUG- -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 63597 | 0.66 | 0.853998 |
Target: 5'- cUCCGGcGGCgCCGgggGUGGCgGUGgagUAUg -3' miRNA: 3'- -AGGUCuCCG-GGCa--CACCGaCGCa--AUG- -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 91318 | 0.66 | 0.838158 |
Target: 5'- -gCGGGGGCCgGgucaaGUGGCUGgGgcACc -3' miRNA: 3'- agGUCUCCGGgCa----CACCGACgCaaUG- -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 87272 | 0.66 | 0.837347 |
Target: 5'- -gCAGAGGCCCGUcauguuuGUGaGCcGUGUgccUGCa -3' miRNA: 3'- agGUCUCCGGGCA-------CAC-CGaCGCA---AUG- -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 49400 | 0.7 | 0.640137 |
Target: 5'- -gCAGAGaGCCaGUGUGGCUGgGgcuggUGCu -3' miRNA: 3'- agGUCUC-CGGgCACACCGACgCa----AUG- -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 71208 | 0.69 | 0.710342 |
Target: 5'- -gCAGGGGCCUc--UGGCUGCGUUc- -3' miRNA: 3'- agGUCUCCGGGcacACCGACGCAAug -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 159137 | 0.68 | 0.720181 |
Target: 5'- gCCAGGGGCCCcgugaugaagGUGUacaGGCUGUGc--- -3' miRNA: 3'- aGGUCUCCGGG----------CACA---CCGACGCaaug -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 159276 | 0.68 | 0.748264 |
Target: 5'- cCCAGggacccgagacgaAGGCCCGUcuguagaggaaGUGGUUGCGcaUGCg -3' miRNA: 3'- aGGUC-------------UCCGGGCA-----------CACCGACGCa-AUG- -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 158131 | 0.68 | 0.758709 |
Target: 5'- cCCGGGGGCgucauagagcuCCGUcUGGCUgGCGUaGCg -3' miRNA: 3'- aGGUCUCCG-----------GGCAcACCGA-CGCAaUG- -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 157367 | 0.67 | 0.81819 |
Target: 5'- cCCGGGGGCCguggggggcaccgGUGUGGUgGCGUUccccGCa -3' miRNA: 3'- aGGUCUCCGGg------------CACACCGaCGCAA----UG- -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 107158 | 0.66 | 0.869053 |
Target: 5'- cUCCGGccuGGCCCGcUGcagGGCUGCc---- -3' miRNA: 3'- -AGGUCu--CCGGGC-ACa--CCGACGcaaug -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 97521 | 0.82 | 0.131536 |
Target: 5'- gCCAGAGGCCgCGUggcGUGGCUGCGUc-- -3' miRNA: 3'- aGGUCUCCGG-GCA---CACCGACGCAaug -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 34577 | 0.73 | 0.462701 |
Target: 5'- cUUCGGGGGCCUGUGUgcccggggguggaGGCUGCGc--- -3' miRNA: 3'- -AGGUCUCCGGGCACA-------------CCGACGCaaug -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 10984 | 0.69 | 0.680471 |
Target: 5'- cCCGGAG-UCUGgacGUGGCUGCGguggUGCg -3' miRNA: 3'- aGGUCUCcGGGCa--CACCGACGCa---AUG- -5' |
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33415 | 5' | -57.7 | NC_007605.1 | + | 110092 | 0.68 | 0.767157 |
Target: 5'- cCCAcGAGccgcuucGCCCGUGUGGCccggGCGgccUACc -3' miRNA: 3'- aGGU-CUC-------CGGGCACACCGa---CGCa--AUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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