miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 3' -57.8 NC_007605.1 + 140710 0.66 0.886357
Target:  5'- cGGGuCCGGGUuccggcccuggagcuCGGGGggcGGCCG-GGUGGc -3'
miRNA:   3'- -CCU-GGUCCG---------------GUUCCa--CCGGUuCCACC- -5'
33416 3' -57.8 NC_007605.1 + 151898 0.66 0.886357
Target:  5'- nGACagaGGGCCuguccaccguggggaGGGGUGGaCGAGGcUGGg -3'
miRNA:   3'- cCUGg--UCCGG---------------UUCCACCgGUUCC-ACC- -5'
33416 3' -57.8 NC_007605.1 + 136554 0.66 0.886357
Target:  5'- nGACagaGGGCCuguccaccguggggaGGGGUGGaCGAGGcUGGg -3'
miRNA:   3'- cCUGg--UCCGG---------------UUCCACCgGUUCC-ACC- -5'
33416 3' -57.8 NC_007605.1 + 154967 0.66 0.886357
Target:  5'- nGACagaGGGCCuguccaccguggggaGGGGUGGaCGAGGcUGGg -3'
miRNA:   3'- cCUGg--UCCGG---------------UUCCACCgGUUCC-ACC- -5'
33416 3' -57.8 NC_007605.1 + 148829 0.66 0.886357
Target:  5'- nGACagaGGGCCuguccaccguggggaGGGGUGGaCGAGGcUGGg -3'
miRNA:   3'- cCUGg--UCCGG---------------UUCCACCgGUUCC-ACC- -5'
33416 3' -57.8 NC_007605.1 + 139623 0.66 0.886357
Target:  5'- nGACagaGGGCCuguccaccguggggaGGGGUGGaCGAGGcUGGg -3'
miRNA:   3'- cCUGg--UCCGG---------------UUCCACCgGUUCC-ACC- -5'
33416 3' -57.8 NC_007605.1 + 158036 0.66 0.886357
Target:  5'- nGACagaGGGCCuguccaccguggggaGGGGUGGaCGAGGcUGGg -3'
miRNA:   3'- cCUGg--UCCGG---------------UUCCACCgGUUCC-ACC- -5'
33416 3' -57.8 NC_007605.1 + 145760 0.66 0.886357
Target:  5'- nGACagaGGGCCuguccaccguggggaGGGGUGGaCGAGGcUGGg -3'
miRNA:   3'- cCUGg--UCCGG---------------UUCCACCgGUUCC-ACC- -5'
33416 3' -57.8 NC_007605.1 + 139719 0.66 0.883655
Target:  5'- gGGACUGGGCCuca--GGCUggGG-GGa -3'
miRNA:   3'- -CCUGGUCCGGuuccaCCGGuuCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 12192 0.66 0.882974
Target:  5'- aGGAgCAGuaccugcGCC-AGGUGGCCAccgaGGGUcuGGc -3'
miRNA:   3'- -CCUgGUC-------CGGuUCCACCGGU----UCCA--CC- -5'
33416 3' -57.8 NC_007605.1 + 142692 0.66 0.881606
Target:  5'- nGACagaGGGCCuguccaccgugggaGGGGUGGaCGAGGcUGGg -3'
miRNA:   3'- cCUGg--UCCGG--------------UUCCACCgGUUCC-ACC- -5'
33416 3' -57.8 NC_007605.1 + 37189 0.66 0.877451
Target:  5'- aGGCCAGaGCCGGGGacagagcagggggagGGgCAGGGgcagGGg -3'
miRNA:   3'- cCUGGUC-CGGUUCCa--------------CCgGUUCCa---CC- -5'
33416 3' -57.8 NC_007605.1 + 119957 0.66 0.876751
Target:  5'- aGGCCAGGCCccccaccGUGGCCAuccUGGc -3'
miRNA:   3'- cCUGGUCCGGuuc----CACCGGUuccACC- -5'
33416 3' -57.8 NC_007605.1 + 91167 0.66 0.876751
Target:  5'- uGGuaACCcauAGGCCAuccGGcGGCCAGGGUu- -3'
miRNA:   3'- -CC--UGG---UCCGGUu--CCaCCGGUUCCAcc -5'
33416 3' -57.8 NC_007605.1 + 54146 0.66 0.876049
Target:  5'- gGGugCAGGgugacgaUCGAGGagacgagGGCCAcgacgcAGGUGGc -3'
miRNA:   3'- -CCugGUCC-------GGUUCCa------CCGGU------UCCACC- -5'
33416 3' -57.8 NC_007605.1 + 118192 0.66 0.874639
Target:  5'- uGGucacCCAGGCCAGGGgccacaccgacccgcGCCAGcucaagaucguGGUGGa -3'
miRNA:   3'- -CCu---GGUCCGGUUCCac-------------CGGUU-----------CCACC- -5'
33416 3' -57.8 NC_007605.1 + 67707 0.66 0.872508
Target:  5'- cGGCCGGGCUaaucagcuucGAGGUcuccccugacgcuguGGCCGAG-UGGc -3'
miRNA:   3'- cCUGGUCCGG----------UUCCA---------------CCGGUUCcACC- -5'
33416 3' -57.8 NC_007605.1 + 140276 0.66 0.869639
Target:  5'- uGGACUcugGGGCCug---GGCCccgAGGGUGGc -3'
miRNA:   3'- -CCUGG---UCCGGuuccaCCGG---UUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 20791 0.66 0.869639
Target:  5'- cGGGCCcaugaAGGCCcGGG-GGCUggcGAGGcGGc -3'
miRNA:   3'- -CCUGG-----UCCGGuUCCaCCGG---UUCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 53093 0.66 0.869639
Target:  5'- aGGCCGGGUUAAGGgGGUCGcAGGg-- -3'
miRNA:   3'- cCUGGUCCGGUUCCaCCGGU-UCCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.