miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 3' -57.8 NC_007605.1 + 120224 0.66 0.862323
Target:  5'- cGGACCAGGCgCAuacUGGCCcuGGgcagcagGGu -3'
miRNA:   3'- -CCUGGUCCG-GUuccACCGGuuCCa------CC- -5'
33416 3' -57.8 NC_007605.1 + 140710 0.66 0.886357
Target:  5'- cGGGuCCGGGUuccggcccuggagcuCGGGGggcGGCCG-GGUGGc -3'
miRNA:   3'- -CCU-GGUCCG---------------GUUCCa--CCGGUuCCACC- -5'
33416 3' -57.8 NC_007605.1 + 20974 0.66 0.847105
Target:  5'- uGGACaGGGCCGAGGagGGCU-GGGUc- -3'
miRNA:   3'- -CCUGgUCCGGUUCCa-CCGGuUCCAcc -5'
33416 3' -57.8 NC_007605.1 + 64708 0.66 0.862323
Target:  5'- gGGugUAGGggugaCGGGGgcUGGCCAGGaUGGg -3'
miRNA:   3'- -CCugGUCCg----GUUCC--ACCGGUUCcACC- -5'
33416 3' -57.8 NC_007605.1 + 15495 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 21633 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 30840 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 57991 0.66 0.847105
Target:  5'- gGGAgCGGGgaccCCGGGGgugugaccuaGGCCGGGGaUGGg -3'
miRNA:   3'- -CCUgGUCC----GGUUCCa---------CCGGUUCC-ACC- -5'
33416 3' -57.8 NC_007605.1 + 24702 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 27771 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 158036 0.66 0.886357
Target:  5'- nGACagaGGGCCuguccaccguggggaGGGGUGGaCGAGGcUGGg -3'
miRNA:   3'- cCUGg--UCCGG---------------UUCCACCgGUUCC-ACC- -5'
33416 3' -57.8 NC_007605.1 + 18564 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 50355 0.66 0.846324
Target:  5'- cGGCgGGGCCGcGGUGGgcugcccCCGAGGacgGGc -3'
miRNA:   3'- cCUGgUCCGGUuCCACC-------GGUUCCa--CC- -5'
33416 3' -57.8 NC_007605.1 + 42869 0.66 0.862323
Target:  5'- aGugCuGGCCAuaucuacaauuGGGUGuCCuAGGUGGg -3'
miRNA:   3'- cCugGuCCGGU-----------UCCACcGGuUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 12426 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 5095 0.66 0.847105
Target:  5'- ---aCAGGCCAGauacguucucGGUGGCCuuGGG-GGa -3'
miRNA:   3'- ccugGUCCGGUU----------CCACCGGu-UCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 37189 0.66 0.877451
Target:  5'- aGGCCAGaGCCGGGGacagagcagggggagGGgCAGGGgcagGGg -3'
miRNA:   3'- cCUGGUC-CGGUUCCa--------------CCgGUUCCa---CC- -5'
33416 3' -57.8 NC_007605.1 + 67707 0.66 0.872508
Target:  5'- cGGCCGGGCUaaucagcuucGAGGUcuccccugacgcuguGGCCGAG-UGGc -3'
miRNA:   3'- cCUGGUCCGG----------UUCCA---------------CCGGUUCcACC- -5'
33416 3' -57.8 NC_007605.1 + 59306 0.66 0.85481
Target:  5'- cGGAgCuccGGCCGu-GUGGCCGAGGaUGa -3'
miRNA:   3'- -CCUgGu--CCGGUucCACCGGUUCC-ACc -5'
33416 3' -57.8 NC_007605.1 + 53093 0.66 0.869639
Target:  5'- aGGCCGGGUUAAGGgGGUCGcAGGg-- -3'
miRNA:   3'- cCUGGUCCGGUUCCaCCGGU-UCCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.