miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 3' -57.8 NC_007605.1 + 20791 0.66 0.869639
Target:  5'- cGGGCCcaugaAGGCCcGGG-GGCUggcGAGGcGGc -3'
miRNA:   3'- -CCUGG-----UCCGGuUCCaCCGG---UUCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 158689 0.66 0.869639
Target:  5'- uGGACUcugGGGCCug---GGCCccgAGGGUGGc -3'
miRNA:   3'- -CCUGG---UCCGGuuccaCCGG---UUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 143345 0.66 0.869639
Target:  5'- uGGACUcugGGGCCug---GGCCccgAGGGUGGc -3'
miRNA:   3'- -CCUGG---UCCGGuuccaCCGG---UUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 53093 0.66 0.869639
Target:  5'- aGGCCGGGUUAAGGgGGUCGcAGGg-- -3'
miRNA:   3'- cCUGGUCCGGUUCCaCCGGU-UCCacc -5'
33416 3' -57.8 NC_007605.1 + 137207 0.66 0.869639
Target:  5'- uGGACUcugGGGCCug---GGCCccgAGGGUGGc -3'
miRNA:   3'- -CCUGG---UCCGGuuccaCCGG---UUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 152552 0.66 0.869639
Target:  5'- uGGACUcugGGGCCug---GGCCccgAGGGUGGc -3'
miRNA:   3'- -CCUGG---UCCGGuuccaCCGG---UUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 149483 0.66 0.869639
Target:  5'- uGGACUcugGGGCCug---GGCCccgAGGGUGGc -3'
miRNA:   3'- -CCUGG---UCCGGuuccaCCGG---UUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 11602 0.66 0.869639
Target:  5'- aGGCgAGGCC-GGGcGGCCcaGAGGaGGg -3'
miRNA:   3'- cCUGgUCCGGuUCCaCCGG--UUCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 106355 0.66 0.868916
Target:  5'- -cACCAGGCagcgcggGAGGcagauguUGGCCAgauugcAGGUGGc -3'
miRNA:   3'- ccUGGUCCGg------UUCC-------ACCGGU------UCCACC- -5'
33416 3' -57.8 NC_007605.1 + 6717 0.66 0.862323
Target:  5'- uGGCCGgcGGCCAcacAGGaGGCCAacAGGaGGa -3'
miRNA:   3'- cCUGGU--CCGGU---UCCaCCGGU--UCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 24702 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 21633 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 18564 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 15495 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 12426 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 120224 0.66 0.862323
Target:  5'- cGGACCAGGCgCAuacUGGCCcuGGgcagcagGGu -3'
miRNA:   3'- -CCUGGUCCG-GUuccACCGGuuCCa------CC- -5'
33416 3' -57.8 NC_007605.1 + 64708 0.66 0.862323
Target:  5'- gGGugUAGGggugaCGGGGgcUGGCCAGGaUGGg -3'
miRNA:   3'- -CCugGUCCg----GUUCC--ACCGGUUCcACC- -5'
33416 3' -57.8 NC_007605.1 + 42869 0.66 0.862323
Target:  5'- aGugCuGGCCAuaucuacaauuGGGUGuCCuAGGUGGg -3'
miRNA:   3'- cCugGuCCGGU-----------UCCACcGGuUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 30840 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 27771 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.