miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 3' -57.8 NC_007605.1 + 5095 0.66 0.847105
Target:  5'- ---aCAGGCCAGauacguucucGGUGGCCuuGGG-GGa -3'
miRNA:   3'- ccugGUCCGGUU----------CCACCGGu-UCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 6647 0.7 0.683918
Target:  5'- uGGACCgAGGCuCAcccuccuccaguAGGaGGUCAGGGUGa -3'
miRNA:   3'- -CCUGG-UCCG-GU------------UCCaCCGGUUCCACc -5'
33416 3' -57.8 NC_007605.1 + 6717 0.66 0.862323
Target:  5'- uGGCCGgcGGCCAcacAGGaGGCCAacAGGaGGa -3'
miRNA:   3'- cCUGGU--CCGGU---UCCaCCGGU--UCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 8231 1.11 0.001608
Target:  5'- aGGACCAGGCCAAGGUGGCCAAGGUGGc -3'
miRNA:   3'- -CCUGGUCCGGUUCCACCGGUUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 9514 0.84 0.105413
Target:  5'- gGGuCCucacGGCCAAGGaGGCCAAGGUGGu -3'
miRNA:   3'- -CCuGGu---CCGGUUCCaCCGGUUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 10797 0.68 0.779357
Target:  5'- cGGCCGGGCUGcugcuGGGUGGagGAGGgcaGGg -3'
miRNA:   3'- cCUGGUCCGGU-----UCCACCggUUCCa--CC- -5'
33416 3' -57.8 NC_007605.1 + 11602 0.66 0.869639
Target:  5'- aGGCgAGGCC-GGGcGGCCcaGAGGaGGg -3'
miRNA:   3'- cCUGgUCCGGuUCCaCCGG--UUCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 11632 0.67 0.814491
Target:  5'- cGGucCCGGGcCCGGGGcGGCCgGAGGcagagGGg -3'
miRNA:   3'- -CCu-GGUCC-GGUUCCaCCGG-UUCCa----CC- -5'
33416 3' -57.8 NC_007605.1 + 12189 0.67 0.831143
Target:  5'- cGGGCCAGGCCAccuuAGacccGGCCAAGc--- -3'
miRNA:   3'- -CCUGGUCCGGU----UCca--CCGGUUCcacc -5'
33416 3' -57.8 NC_007605.1 + 12192 0.66 0.882974
Target:  5'- aGGAgCAGuaccugcGCC-AGGUGGCCAccgaGGGUcuGGc -3'
miRNA:   3'- -CCUgGUC-------CGGuUCCACCGGU----UCCA--CC- -5'
33416 3' -57.8 NC_007605.1 + 12304 0.67 0.797208
Target:  5'- aGACCAGuCCAGGG-GcCCGAGGUuGGa -3'
miRNA:   3'- cCUGGUCcGGUUCCaCcGGUUCCA-CC- -5'
33416 3' -57.8 NC_007605.1 + 12426 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 12496 0.71 0.604183
Target:  5'- gGGGCCuGGCUccgccGGGUGGCCcuGG-GGu -3'
miRNA:   3'- -CCUGGuCCGGu----UCCACCGGuuCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 15157 0.67 0.814491
Target:  5'- --uUCuGGUCcuGGUGGCgGGGGUGGu -3'
miRNA:   3'- ccuGGuCCGGuuCCACCGgUUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 15258 0.67 0.831143
Target:  5'- cGGGCCAGGCCAccuuAGacccGGCCAAGc--- -3'
miRNA:   3'- -CCUGGUCCGGU----UCca--CCGGUUCcacc -5'
33416 3' -57.8 NC_007605.1 + 15373 0.67 0.797208
Target:  5'- aGACCAGuCCAGGG-GcCCGAGGUuGGa -3'
miRNA:   3'- cCUGGUCcGGUUCCaCcGGUUCCA-CC- -5'
33416 3' -57.8 NC_007605.1 + 15495 0.66 0.862323
Target:  5'- gGGGCCGgucGGCUggGcUGGCCGAGcccGGg -3'
miRNA:   3'- -CCUGGU---CCGGuuCcACCGGUUCca-CC- -5'
33416 3' -57.8 NC_007605.1 + 15565 0.71 0.604183
Target:  5'- gGGGCCuGGCUccgccGGGUGGCCcuGG-GGu -3'
miRNA:   3'- -CCUGGuCCGGu----UCCACCGGuuCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 15909 0.67 0.831143
Target:  5'- uGGGCCggcgcaAGGCCGAuGG-GGCCAGcGUGu -3'
miRNA:   3'- -CCUGG------UCCGGUU-CCaCCGGUUcCACc -5'
33416 3' -57.8 NC_007605.1 + 18327 0.67 0.831143
Target:  5'- cGGGCCAGGCCAccuuAGacccGGCCAAGc--- -3'
miRNA:   3'- -CCUGGUCCGGU----UCca--CCGGUUCcacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.