miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 3' -57.8 NC_007605.1 + 61254 0.71 0.614156
Target:  5'- aGGGCCGGaGCCGGGGccggGGCCugccacAGGcGGc -3'
miRNA:   3'- -CCUGGUC-CGGUUCCa---CCGGu-----UCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 12496 0.71 0.604183
Target:  5'- gGGGCCuGGCUccgccGGGUGGCCcuGG-GGu -3'
miRNA:   3'- -CCUGGuCCGGu----UCCACCGGuuCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 15565 0.71 0.604183
Target:  5'- gGGGCCuGGCUccgccGGGUGGCCcuGG-GGu -3'
miRNA:   3'- -CCUGGuCCGGu----UCCACCGGuuCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 18634 0.71 0.604183
Target:  5'- gGGGCCuGGCUccgccGGGUGGCCcuGG-GGu -3'
miRNA:   3'- -CCUGGuCCGGu----UCCACCGGuuCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 21703 0.71 0.604183
Target:  5'- gGGGCCuGGCUccgccGGGUGGCCcuGG-GGu -3'
miRNA:   3'- -CCUGGuCCGGu----UCCACCGGuuCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 24772 0.71 0.604183
Target:  5'- gGGGCCuGGCUccgccGGGUGGCCcuGG-GGu -3'
miRNA:   3'- -CCUGGuCCGGu----UCCACCGGuuCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 27841 0.71 0.604183
Target:  5'- gGGGCCuGGCUccgccGGGUGGCCcuGG-GGu -3'
miRNA:   3'- -CCUGGuCCGGu----UCCACCGGuuCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 33978 0.71 0.604183
Target:  5'- gGGGCCuGGCUccgccGGGUGGCCcuGG-GGu -3'
miRNA:   3'- -CCUGGuCCGGu----UCCACCGGuuCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 58058 0.71 0.604183
Target:  5'- gGGGCCgcggAGGCCGGGGccgcggaGGCCGGGGccgcGGa -3'
miRNA:   3'- -CCUGG----UCCGGUUCCa------CCGGUUCCa---CC- -5'
33416 3' -57.8 NC_007605.1 + 164025 0.72 0.558662
Target:  5'- cGGuCCccaguguGGCCAccucccuaagaggguAGGUGGCCAGGG-GGu -3'
miRNA:   3'- -CCuGGu------CCGGU---------------UCCACCGGUUCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 118201 0.73 0.497131
Target:  5'- aGGACa--GCguGGG-GGCCAAGGUGGu -3'
miRNA:   3'- -CCUGgucCGguUCCaCCGGUUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 71109 0.73 0.487782
Target:  5'- uGGGCUcuagggucagagAGGCCAGGGggcUGGgCAAGGUGa -3'
miRNA:   3'- -CCUGG------------UCCGGUUCC---ACCgGUUCCACc -5'
33416 3' -57.8 NC_007605.1 + 91321 0.76 0.343996
Target:  5'- gGGGCCGGGUCAA-GUGGCUggGGcaccgGGg -3'
miRNA:   3'- -CCUGGUCCGGUUcCACCGGuuCCa----CC- -5'
33416 3' -57.8 NC_007605.1 + 40288 0.76 0.351567
Target:  5'- aGGACCGcGGCCGagccaccaGGGgcccGGCgGGGGUGGg -3'
miRNA:   3'- -CCUGGU-CCGGU--------UCCa---CCGgUUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 52310 0.75 0.367061
Target:  5'- uGGACCAGGCCcaagaacucGGGGUgcGGCCAgaGGGcGGc -3'
miRNA:   3'- -CCUGGUCCGG---------UUCCA--CCGGU--UCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 50869 0.75 0.374982
Target:  5'- uGGCCGGGCUuguAGGgGGCUgAGGGUGGa -3'
miRNA:   3'- cCUGGUCCGGu--UCCaCCGG-UUCCACC- -5'
33416 3' -57.8 NC_007605.1 + 133135 0.75 0.374982
Target:  5'- aGGGCCAGGUCGgagcggugggacAGGUGuGCCcAGGUGc -3'
miRNA:   3'- -CCUGGUCCGGU------------UCCAC-CGGuUCCACc -5'
33416 3' -57.8 NC_007605.1 + 155187 0.75 0.398598
Target:  5'- aGGAUCAGGUCAGccucguuGGUGGCCGuGG-GGa -3'
miRNA:   3'- -CCUGGUCCGGUU-------CCACCGGUuCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 53840 0.74 0.424873
Target:  5'- --cCCGGGCCAGGGcGGCCucGAGG-GGa -3'
miRNA:   3'- ccuGGUCCGGUUCCaCCGG--UUCCaCC- -5'
33416 3' -57.8 NC_007605.1 + 104702 0.74 0.424873
Target:  5'- cGGACCAgGGUCAacAGGUGGUCGuGGGaUGGc -3'
miRNA:   3'- -CCUGGU-CCGGU--UCCACCGGU-UCC-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.