miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 104844 0.66 0.927823
Target:  5'- aUCCC--CCUgAaagaugGCCAUCAGUaggCACCCGg -3'
miRNA:   3'- -AGGGucGGAgU------UGGUAGUCA---GUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 25848 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 22779 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 31985 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 35054 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 13572 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 16641 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 19710 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 66387 0.66 0.916886
Target:  5'- aCUCgggGGCCUCuacACCG-CcGUCACCCGg -3'
miRNA:   3'- aGGG---UCGGAGu--UGGUaGuCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 153242 0.66 0.916886
Target:  5'- gCCgGGuCCUCGGCCAUCuccgucuuucUCGCCCc -3'
miRNA:   3'- aGGgUC-GGAGUUGGUAGuc--------AGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 48192 0.66 0.916886
Target:  5'- gCCCAGUCUCAcGCCAgcgagcUCGaUC-CCCGg -3'
miRNA:   3'- aGGGUCGGAGU-UGGU------AGUcAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 28917 0.66 0.916314
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU-------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 41087 0.66 0.911066
Target:  5'- -gCCAGCCUCAGCgAgguuaAGcugCACCUGg -3'
miRNA:   3'- agGGUCGGAGUUGgUag---UCa--GUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 118681 0.66 0.911066
Target:  5'- cUCCCGGCCUCuuUUAUagcUAGUCuccacACCCa -3'
miRNA:   3'- -AGGGUCGGAGuuGGUA---GUCAG-----UGGGc -5'
33416 5' -56.2 NC_007605.1 + 128928 0.66 0.905013
Target:  5'- gCCgAGCCUCgGACCucaCGGUCACUa- -3'
miRNA:   3'- aGGgUCGGAG-UUGGua-GUCAGUGGgc -5'
33416 5' -56.2 NC_007605.1 + 109067 0.66 0.904395
Target:  5'- uUCCaGGCCUCAuCCugcGUCaacagauAGUCACCCu -3'
miRNA:   3'- -AGGgUCGGAGUuGG---UAG-------UCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 26522 0.66 0.89873
Target:  5'- gCCCAGCCUUcaGACUAUCAa--ACCUa -3'
miRNA:   3'- aGGGUCGGAG--UUGGUAGUcagUGGGc -5'
33416 5' -56.2 NC_007605.1 + 143703 0.66 0.89873
Target:  5'- gCCCGGaCUC-GCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 146919 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 140781 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.