miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 144355 0.67 0.863976
Target:  5'- uUCCUAGCCagGGCCAUguGUU-CCUGc -3'
miRNA:   3'- -AGGGUCGGagUUGGUAguCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 130028 0.67 0.859448
Target:  5'- -aCCAGgCUCAACaCAugcucaucucccuucUCGGUCACUCGc -3'
miRNA:   3'- agGGUCgGAGUUG-GU---------------AGUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 8392 0.68 0.815593
Target:  5'- -gCCAGCCUCAACUAcgacUC-GUgGCCCc -3'
miRNA:   3'- agGGUCGGAGUUGGU----AGuCAgUGGGc -5'
33416 5' -56.2 NC_007605.1 + 114150 0.68 0.840622
Target:  5'- --gCAGCC-CAcGCCAUCAGcCGCCCc -3'
miRNA:   3'- aggGUCGGaGU-UGGUAGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 54174 0.68 0.848602
Target:  5'- -gCCAGCCUgGGCgGggCGGUUGCCUGg -3'
miRNA:   3'- agGGUCGGAgUUGgUa-GUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 36568 0.68 0.832455
Target:  5'- -gCCGGaCCUgAGCCA--GGUCACCCu -3'
miRNA:   3'- agGGUC-GGAgUUGGUagUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 96713 0.68 0.848602
Target:  5'- gUCCCAGUagUCAGUCAUCA-UCAUCCGg -3'
miRNA:   3'- -AGGGUCGg-AGUUGGUAGUcAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 55351 0.68 0.840622
Target:  5'- cUCCAGCgUCAGCC---GGUUGCCCa -3'
miRNA:   3'- aGGGUCGgAGUUGGuagUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 103936 0.68 0.82411
Target:  5'- cUCCauaGGCCUCuGCCGggaggugcUgGGUCGCCUGa -3'
miRNA:   3'- -AGGg--UCGGAGuUGGU--------AgUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 10764 0.68 0.815593
Target:  5'- cCCCAgauGCCcc--CCAcCAGUCACCCGg -3'
miRNA:   3'- aGGGU---CGGaguuGGUaGUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 150758 0.68 0.848602
Target:  5'- gUCCCAGCCgaggCcgcGCCAgagCAGa-GCCCGg -3'
miRNA:   3'- -AGGGUCGGa---Gu--UGGUa--GUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 137565 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 140634 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 155978 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 152909 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 149840 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 146771 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 118669 0.69 0.796291
Target:  5'- cCCCAGCCggacgcccccaAGCUAUUGGUCcCCCGc -3'
miRNA:   3'- aGGGUCGGag---------UUGGUAGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 118552 0.69 0.789092
Target:  5'- aCCCGGCCUaCGucuCCG-CAGaCACCCa -3'
miRNA:   3'- aGGGUCGGA-GUu--GGUaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 39539 0.69 0.770716
Target:  5'- gCCCaggggAGCC-CAGCCAcCAG-CACCCGc -3'
miRNA:   3'- aGGG-----UCGGaGUUGGUaGUCaGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.