miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 120960 0.69 0.810404
Target:  5'- aCCC-GCCUCcccacGGCCGUCGGgcugcgaccccgugCGCCCGu -3'
miRNA:   3'- aGGGuCGGAG-----UUGGUAGUCa-------------GUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 118552 0.69 0.789092
Target:  5'- aCCCGGCCUaCGucuCCG-CAGaCACCCa -3'
miRNA:   3'- aGGGUCGGA-GUu--GGUaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 39539 0.69 0.770716
Target:  5'- gCCCaggggAGCC-CAGCCAcCAG-CACCCGc -3'
miRNA:   3'- aGGG-----UCGGaGUUGGUaGUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 164722 0.69 0.798076
Target:  5'- aCCCAcGCCUCGACCGg-GGUC-CUCa -3'
miRNA:   3'- aGGGU-CGGAGUUGGUagUCAGuGGGc -5'
33416 5' -56.2 NC_007605.1 + 117716 0.69 0.798076
Target:  5'- -gCCAGCCUUucuGCCAgucaGGUCACCg- -3'
miRNA:   3'- agGGUCGGAGu--UGGUag--UCAGUGGgc -5'
33416 5' -56.2 NC_007605.1 + 133809 0.69 0.761341
Target:  5'- aUCgCCGaCCUCAagGCCA--AGUCACCCGg -3'
miRNA:   3'- -AG-GGUcGGAGU--UGGUagUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 48581 0.7 0.703043
Target:  5'- aUCCCAcGCCUCcaGACCGgu-GUCugGCCCGg -3'
miRNA:   3'- -AGGGU-CGGAG--UUGGUaguCAG--UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 43691 0.7 0.742263
Target:  5'- gCCCAGCUUgGGCac-CuGUCGCCCGa -3'
miRNA:   3'- aGGGUCGGAgUUGguaGuCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 164314 0.7 0.751854
Target:  5'- gCCCAGCCUCGcaaACCAg-AGUCugCg- -3'
miRNA:   3'- aGGGUCGGAGU---UGGUagUCAGugGgc -5'
33416 5' -56.2 NC_007605.1 + 100204 0.7 0.722806
Target:  5'- gCCCAGCUcCAucCCAgCAGUCACCUc -3'
miRNA:   3'- aGGGUCGGaGUu-GGUaGUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 125122 0.71 0.693068
Target:  5'- cCCUGGCCUgCAACCG-CAGccCACCCa -3'
miRNA:   3'- aGGGUCGGA-GUUGGUaGUCa-GUGGGc -5'
33416 5' -56.2 NC_007605.1 + 54045 0.71 0.683044
Target:  5'- gCCCGGaCCUCGGCCGccucggccUCGGUCAgcagcUCCGa -3'
miRNA:   3'- aGGGUC-GGAGUUGGU--------AGUCAGU-----GGGC- -5'
33416 5' -56.2 NC_007605.1 + 13762 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 16831 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 19900 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 22968 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 26037 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 32175 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 35244 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 169293 0.71 0.693068
Target:  5'- gUCCGGCCUCGugUcagCGGUCucugGCCCGg -3'
miRNA:   3'- aGGGUCGGAGUugGua-GUCAG----UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.