Results 81 - 92 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33416 | 5' | -56.2 | NC_007605.1 | + | 169293 | 0.71 | 0.693068 |
Target: 5'- gUCCGGCCUCGugUcagCGGUCucugGCCCGg -3' miRNA: 3'- aGGGUCGGAGUugGua-GUCAG----UGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 14180 | 0.72 | 0.642619 |
Target: 5'- cCCCAGCCccauccgCGGCCcgCGGgagCACCCc -3' miRNA: 3'- aGGGUCGGa------GUUGGuaGUCa--GUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 36978 | 0.72 | 0.591957 |
Target: 5'- gCCCAGCgUCAggaaguacaGCCGgucgUAGUCAUCCGa -3' miRNA: 3'- aGGGUCGgAGU---------UGGUa---GUCAGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 114201 | 0.73 | 0.581883 |
Target: 5'- --gCAGCCcCcGCCAUCAGcCGCCCGg -3' miRNA: 3'- aggGUCGGaGuUGGUAGUCaGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 113919 | 0.73 | 0.551898 |
Target: 5'- -gCCAGUCUCAACUAucgcuccuUCAGUCACuCCa -3' miRNA: 3'- agGGUCGGAGUUGGU--------AGUCAGUG-GGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 167221 | 0.73 | 0.571843 |
Target: 5'- gCCCGGCCagGGCCAUCuccaccaggcaGGUCACCa- -3' miRNA: 3'- aGGGUCGGagUUGGUAG-----------UCAGUGGgc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 133352 | 0.74 | 0.532167 |
Target: 5'- cCCCAGCC-CAGCCGuucacUCGGcUCACCgGg -3' miRNA: 3'- aGGGUCGGaGUUGGU-----AGUC-AGUGGgC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 61504 | 0.74 | 0.522397 |
Target: 5'- cCUCGGCCUCcGCCcgCAGguaggcCGCCCGg -3' miRNA: 3'- aGGGUCGGAGuUGGuaGUCa-----GUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 23133 | 0.75 | 0.444424 |
Target: 5'- cCCCAGCCUguGCCAuaccacaccccccaUUAGUCuCCCGa -3' miRNA: 3'- aGGGUCGGAguUGGU--------------AGUCAGuGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 65359 | 0.76 | 0.386495 |
Target: 5'- gCCCucCCUCGACUcUCAGUCACCCu -3' miRNA: 3'- aGGGucGGAGUUGGuAGUCAGUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 32893 | 0.8 | 0.239468 |
Target: 5'- uUCCgGGCCUCAGCCAUCG---GCCCGg -3' miRNA: 3'- -AGGgUCGGAGUUGGUAGUcagUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 8272 | 1.1 | 0.002655 |
Target: 5'- uUCCCAGCCUCAACCAUCAGUCACCCGg -3' miRNA: 3'- -AGGGUCGGAGUUGGUAGUCAGUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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