Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33416 | 5' | -56.2 | NC_007605.1 | + | 155978 | 0.69 | 0.798076 |
Target: 5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3' miRNA: 3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 36568 | 0.68 | 0.832455 |
Target: 5'- -gCCGGaCCUgAGCCA--GGUCACCCu -3' miRNA: 3'- agGGUC-GGAgUUGGUagUCAGUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 54174 | 0.68 | 0.848602 |
Target: 5'- -gCCAGCCUgGGCgGggCGGUUGCCUGg -3' miRNA: 3'- agGGUCGGAgUUGgUa-GUCAGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 114150 | 0.68 | 0.840622 |
Target: 5'- --gCAGCC-CAcGCCAUCAGcCGCCCc -3' miRNA: 3'- aggGUCGGaGU-UGGUAGUCaGUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 150758 | 0.68 | 0.848602 |
Target: 5'- gUCCCAGCCgaggCcgcGCCAgagCAGa-GCCCGg -3' miRNA: 3'- -AGGGUCGGa---Gu--UGGUa--GUCagUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 10764 | 0.68 | 0.815593 |
Target: 5'- cCCCAgauGCCcc--CCAcCAGUCACCCGg -3' miRNA: 3'- aGGGU---CGGaguuGGUaGUCAGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 103936 | 0.68 | 0.82411 |
Target: 5'- cUCCauaGGCCUCuGCCGggaggugcUgGGUCGCCUGa -3' miRNA: 3'- -AGGg--UCGGAGuUGGU--------AgUCAGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 8392 | 0.68 | 0.815593 |
Target: 5'- -gCCAGCCUCAACUAcgacUC-GUgGCCCc -3' miRNA: 3'- agGGUCGGAGUUGGU----AGuCAgUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 96713 | 0.68 | 0.848602 |
Target: 5'- gUCCCAGUagUCAGUCAUCA-UCAUCCGg -3' miRNA: 3'- -AGGGUCGg-AGUUGGUAGUcAGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 55351 | 0.68 | 0.840622 |
Target: 5'- cUCCAGCgUCAGCC---GGUUGCCCa -3' miRNA: 3'- aGGGUCGgAGUUGGuagUCAGUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 22706 | 0.67 | 0.871358 |
Target: 5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3' miRNA: 3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 160038 | 0.67 | 0.885485 |
Target: 5'- gCCCGGCCUCGccuucuccucaGCCuccaaCAGgUGCCCGa -3' miRNA: 3'- aGGGUCGGAGU-----------UGGua---GUCaGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 34981 | 0.67 | 0.871358 |
Target: 5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3' miRNA: 3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 144355 | 0.67 | 0.863976 |
Target: 5'- uUCCUAGCCagGGCCAUguGUU-CCUGc -3' miRNA: 3'- -AGGGUCGGagUUGGUAguCAGuGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 123930 | 0.67 | 0.871358 |
Target: 5'- gCCCAGCUUgaugacggCGGCUgagAUCGG-CACCCGg -3' miRNA: 3'- aGGGUCGGA--------GUUGG---UAGUCaGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 13499 | 0.67 | 0.871358 |
Target: 5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3' miRNA: 3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 16568 | 0.67 | 0.871358 |
Target: 5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3' miRNA: 3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 25775 | 0.67 | 0.871358 |
Target: 5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3' miRNA: 3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 19637 | 0.67 | 0.871358 |
Target: 5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3' miRNA: 3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 76417 | 0.67 | 0.892219 |
Target: 5'- gUCauuaUAGCCUCAGCCAUC---UACCUGa -3' miRNA: 3'- -AGg---GUCGGAGUUGGUAGucaGUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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