miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 13499 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 146919 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 140781 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 153057 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 156126 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 159195 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 143850 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 76417 0.67 0.892219
Target:  5'- gUCauuaUAGCCUCAGCCAUC---UACCUGa -3'
miRNA:   3'- -AGg---GUCGGAGUUGGUAGucaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 16568 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 160038 0.67 0.885485
Target:  5'- gCCCGGCCUCGccuucuccucaGCCuccaaCAGgUGCCCGa -3'
miRNA:   3'- aGGGUCGGAGU-----------UGGua---GUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 19637 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 22706 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 25775 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 34981 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 104844 0.66 0.927823
Target:  5'- aUCCC--CCUgAaagaugGCCAUCAGUaggCACCCGg -3'
miRNA:   3'- -AGGGucGGAgU------UGGUAGUCA---GUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 66387 0.66 0.916886
Target:  5'- aCUCgggGGCCUCuacACCG-CcGUCACCCGg -3'
miRNA:   3'- aGGG---UCGGAGu--UGGUaGuCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 19710 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 22779 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 25848 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 35054 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.