miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 8272 1.1 0.002655
Target:  5'- uUCCCAGCCUCAACCAUCAGUCACCCGg -3'
miRNA:   3'- -AGGGUCGGAGUUGGUAGUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 32893 0.8 0.239468
Target:  5'- uUCCgGGCCUCAGCCAUCG---GCCCGg -3'
miRNA:   3'- -AGGgUCGGAGUUGGUAGUcagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 65359 0.76 0.386495
Target:  5'- gCCCucCCUCGACUcUCAGUCACCCu -3'
miRNA:   3'- aGGGucGGAGUUGGuAGUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 23133 0.75 0.444424
Target:  5'- cCCCAGCCUguGCCAuaccacaccccccaUUAGUCuCCCGa -3'
miRNA:   3'- aGGGUCGGAguUGGU--------------AGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 61504 0.74 0.522397
Target:  5'- cCUCGGCCUCcGCCcgCAGguaggcCGCCCGg -3'
miRNA:   3'- aGGGUCGGAGuUGGuaGUCa-----GUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 133352 0.74 0.532167
Target:  5'- cCCCAGCC-CAGCCGuucacUCGGcUCACCgGg -3'
miRNA:   3'- aGGGUCGGaGUUGGU-----AGUC-AGUGGgC- -5'
33416 5' -56.2 NC_007605.1 + 113919 0.73 0.551898
Target:  5'- -gCCAGUCUCAACUAucgcuccuUCAGUCACuCCa -3'
miRNA:   3'- agGGUCGGAGUUGGU--------AGUCAGUG-GGc -5'
33416 5' -56.2 NC_007605.1 + 167221 0.73 0.571843
Target:  5'- gCCCGGCCagGGCCAUCuccaccaggcaGGUCACCa- -3'
miRNA:   3'- aGGGUCGGagUUGGUAG-----------UCAGUGGgc -5'
33416 5' -56.2 NC_007605.1 + 114201 0.73 0.581883
Target:  5'- --gCAGCCcCcGCCAUCAGcCGCCCGg -3'
miRNA:   3'- aggGUCGGaGuUGGUAGUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 36978 0.72 0.591957
Target:  5'- gCCCAGCgUCAggaaguacaGCCGgucgUAGUCAUCCGa -3'
miRNA:   3'- aGGGUCGgAGU---------UGGUa---GUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 14180 0.72 0.642619
Target:  5'- cCCCAGCCccauccgCGGCCcgCGGgagCACCCc -3'
miRNA:   3'- aGGGUCGGa------GUUGGuaGUCa--GUGGGc -5'
33416 5' -56.2 NC_007605.1 + 54045 0.71 0.683044
Target:  5'- gCCCGGaCCUCGGCCGccucggccUCGGUCAgcagcUCCGa -3'
miRNA:   3'- aGGGUC-GGAGUUGGU--------AGUCAGU-----GGGC- -5'
33416 5' -56.2 NC_007605.1 + 125122 0.71 0.693068
Target:  5'- cCCUGGCCUgCAACCG-CAGccCACCCa -3'
miRNA:   3'- aGGGUCGGA-GUUGGUaGUCa-GUGGGc -5'
33416 5' -56.2 NC_007605.1 + 35244 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 29106 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 26037 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 19900 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 16831 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 13762 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 32175 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.