Results 61 - 80 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33416 | 5' | -56.2 | NC_007605.1 | + | 28844 | 0.67 | 0.871358 |
Target: 5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3' miRNA: 3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 65386 | 0.67 | 0.878529 |
Target: 5'- cUUCCAGCCUCucuuuCCAgcacaggUGGUCugCCa -3' miRNA: 3'- -AGGGUCGGAGuu---GGUa------GUCAGugGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 160038 | 0.67 | 0.885485 |
Target: 5'- gCCCGGCCUCGccuucuccucaGCCuccaaCAGgUGCCCGa -3' miRNA: 3'- aGGGUCGGAGU-----------UGGua---GUCaGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 34019 | 0.67 | 0.890222 |
Target: 5'- aUCCCAGCCacuACCAuagcccccaccacaUUAGUCuCCCa -3' miRNA: 3'- -AGGGUCGGaguUGGU--------------AGUCAGuGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 140781 | 0.67 | 0.892219 |
Target: 5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3' miRNA: 3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 61313 | 0.67 | 0.892219 |
Target: 5'- gCCCuucGCCUgGAUCugCAGUCGCUCGg -3' miRNA: 3'- aGGGu--CGGAgUUGGuaGUCAGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 99077 | 0.67 | 0.892219 |
Target: 5'- gUCUUAGCCggCAGCUgcgccucuuuGUCuGUCAUCCGg -3' miRNA: 3'- -AGGGUCGGa-GUUGG----------UAGuCAGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 153057 | 0.67 | 0.892219 |
Target: 5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3' miRNA: 3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 143850 | 0.67 | 0.892219 |
Target: 5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3' miRNA: 3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 146919 | 0.67 | 0.892219 |
Target: 5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3' miRNA: 3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 149988 | 0.67 | 0.892219 |
Target: 5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3' miRNA: 3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 156126 | 0.67 | 0.892219 |
Target: 5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3' miRNA: 3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 76417 | 0.67 | 0.892219 |
Target: 5'- gUCauuaUAGCCUCAGCCAUC---UACCUGa -3' miRNA: 3'- -AGg---GUCGGAGUUGGUAGucaGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 159195 | 0.67 | 0.892219 |
Target: 5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3' miRNA: 3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 26522 | 0.66 | 0.89873 |
Target: 5'- gCCCAGCCUUcaGACUAUCAa--ACCUa -3' miRNA: 3'- aGGGUCGGAG--UUGGUAGUcagUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 143703 | 0.66 | 0.89873 |
Target: 5'- gCCCGGaCUC-GCCAaCAGagACCCGg -3' miRNA: 3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 109067 | 0.66 | 0.904395 |
Target: 5'- uUCCaGGCCUCAuCCugcGUCaacagauAGUCACCCu -3' miRNA: 3'- -AGGgUCGGAGUuGG---UAG-------UCAGUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 128928 | 0.66 | 0.905013 |
Target: 5'- gCCgAGCCUCgGACCucaCGGUCACUa- -3' miRNA: 3'- aGGgUCGGAG-UUGGua-GUCAGUGGgc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 41087 | 0.66 | 0.911066 |
Target: 5'- -gCCAGCCUCAGCgAgguuaAGcugCACCUGg -3' miRNA: 3'- agGGUCGGAGUUGgUag---UCa--GUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 118681 | 0.66 | 0.911066 |
Target: 5'- cUCCCGGCCUCuuUUAUagcUAGUCuccacACCCa -3' miRNA: 3'- -AGGGUCGGAGuuGGUA---GUCAG-----UGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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